Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0037
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    26   5.2  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   6.8  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   9.0  

>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 251 LFVPRYSKANETKRAKRHCVFP 186
           +FV   S+ANE  R  R C FP
Sbjct: 300 IFVKSVSRANELDRLLRECNFP 321


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 352 LHLFLNTLIYTFIQYLQNNSLIQISAGFL*NGNVCLY 242
           L  F   L Y   +Y QNNSL  +    L   ++C++
Sbjct: 613 LGAFTGNLGYPIFKYFQNNSLQHLLVPVLGLASICVF 649


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 278 RRFFVKWERLFVPRYSK 228
           RR +V W RL +P Y+K
Sbjct: 565 RRQYVNWPRLVLPTYAK 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,108
Number of Sequences: 5004
Number of extensions: 50186
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)