Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0035
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   0.76 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.3  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    22   4.1  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   5.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.4  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.4  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 33  TRIHYIKYFNRYNVGFFIFY 92
           TRI  + Y+ +Y V FF FY
Sbjct: 133 TRIMGVAYYEQYAVEFFQFY 152


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 195  VLRSQYSYNGPTLQTETHY 251
            V+ + + Y+GP ++ E HY
Sbjct: 1169 VMENSWFYDGPLIRGEVHY 1187


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 195  VLRSQYSYNGPTLQTETHY 251
            V+ + + Y+GP ++ E HY
Sbjct: 1169 VMENSWFYDGPLIRGEVHY 1187


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 255 SSNAFRFEGW-GRCNYTETLELISQGAWRI 169
           + N+ ++ G  G   Y E +EL  +G W++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 231 LQTETHYCFTAEIGREVVPTRADSQEV 311
           +QT+      + +G+E +PT  D QE+
Sbjct: 18  IQTKVREEILSVVGKEKIPTYNDLQEL 44


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 234 EGWGRCNYTETLELISQGAWRIYVVDV 154
           + WG   + +T +LIS G +R+ +  V
Sbjct: 477 QSWGASQWPDTPDLISDG-YRVIISHV 502


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 VTTAPPFKPKRITASR 261
           V+T+PP KP   TAS+
Sbjct: 149 VSTSPPGKPATSTASQ 164


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 VTTAPPFKPKRITASR 261
           V+T+PP KP   TAS+
Sbjct: 149 VSTSPPGKPATSTASQ 164


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 VTTAPPFKPKRITASR 261
           V+T+PP KP   TAS+
Sbjct: 149 VSTSPPGKPATSTASQ 164


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 VTTAPPFKPKRITASR 261
           V+T+PP KP   TAS+
Sbjct: 149 VSTSPPGKPATSTASQ 164


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 VTTAPPFKPKRITASR 261
           V+T+PP KP   TAS+
Sbjct: 105 VSTSPPGKPATSTASQ 120


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 VTTAPPFKPKRITASR 261
           V+T+PP KP   TAS+
Sbjct: 149 VSTSPPGKPATSTASQ 164


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 214 VTTAPPFKPKRITASR 261
           V+T+PP KP   TAS+
Sbjct: 149 VSTSPPGKPATSTASQ 164


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 472 KKNDPYNAYVNYSFVTERVCLFYGLNVNFL 561
           K+N   + Y  Y FV+   CL + ++V F+
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLFFVSVLFI 317


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 472 KKNDPYNAYVNYSFVTERVCLFYGLNVNFL 561
           K+N   + Y  Y FV+   CL + ++V F+
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLFFVSVLFI 317


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 472 KKNDPYNAYVNYSFVTERVCLFYGLNVNFL 561
           K+N   + Y  Y FV+   CL + ++V F+
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLFFVSVLFI 317


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 472 KKNDPYNAYVNYSFVTERVCLFYGLNVNFL 561
           K+N   + Y  Y FV+   CL + ++V F+
Sbjct: 288 KENLEQSRYFIYMFVSVWKCLLFFVSVLFI 317


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 309 PLVSPHG*VPPP 274
           P V PH  VPPP
Sbjct: 12  PTVLPHQEVPPP 23


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 120 AVSSSTHLSNKK*KNQHY 67
           A SS   LSN   KN HY
Sbjct: 556 AFSSLKELSNHMVKNSHY 573


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,878
Number of Sequences: 336
Number of extensions: 3690
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)