Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0035
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   3.3  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.8  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 501 NVCVVRVIFFFLCILHTGFVCTNKLDWC 418
           N+C+   ++   C  HT  + + +LD+C
Sbjct: 65  NICLASFLYLSKCYYHTHILTSVRLDFC 92


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 236 NRNALLLHG*NRQGGGTYPCGL--TRGPTTSKGSFRLASFL 352
           N   ++LHG N Q      CGL       T+K     ASFL
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFMVTSSNTNKWKIAFASFL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,581
Number of Sequences: 5004
Number of extensions: 56255
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)