Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0035
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963...    29   2.6  
07_03_0458 + 18406844-18408877                                         28   7.9  
01_01_0598 + 4443768-4443949,4444053-4444150,4444275-4444308,444...    28   7.9  

>01_01_1197 -
           9630506-9630681,9630774-9630805,9630894-9630988,
           9631569-9631642,9631732-9631843,9631967-9632030,
           9632210-9632275,9632396-9632526,9632884-9633021,
           9633115-9633227,9633306-9633471,9633588-9633701,
           9633791-9633853,9633953-9634060,9634143-9634259,
           9634343-9634505,9634646-9634743,9634852-9634949,
           9635054-9635190,9635309-9635530,9635625-9635830,
           9636758-9636845,9638085-9638668
          Length = 1054

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +3

Query: 138 VTGAHRHLQRKCATHLEI*VLRSQYSYNGPTLQTETHYCFTAEIGREVVPTRADSQEVLP 317
           V G HR ++RKC  H+        Y   G TL  ET+ C   ++G ++ P    S+ V P
Sbjct: 84  VGGLHRSIRRKCRCHV--------YRERGTTL-GETNCCH-LQVGPDLPPGPTVSEYVSP 133

Query: 318 P 320
           P
Sbjct: 134 P 134


>07_03_0458 + 18406844-18408877
          Length = 677

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 423 WCFIGIVKSKPKLNHYIKCVSHLYKNEANLKEP 325
           WC    V  +P ++  ++C+  +  N  NL +P
Sbjct: 620 WCLASKVTERPAMDKVVRCLRAVLTNLQNLHDP 652


>01_01_0598 +
           4443768-4443949,4444053-4444150,4444275-4444308,
           4444629-4444780,4444871-4445051,4445707-4445887,
           4446034-4446142,4446324-4446451,4446758-4446832
          Length = 379

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = -1

Query: 420 CFIGIVKSKPKLNHYIKCVSHLY-----KNEANLKEPLLVV 313
           CF G + SK     Y+ C+ HLY     K  +   EPL ++
Sbjct: 107 CFFGDISSKRDPETYLNCLFHLYDYFVEKYRSGASEPLPLI 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,565,215
Number of Sequences: 37544
Number of extensions: 338097
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)