Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0035
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01110.1 68414.m00014 expressed protein contains Prosite PS00...    29   2.2  
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    28   6.6  

>At1g01110.1 68414.m00014 expressed protein contains Prosite
           PS00165: Serine/threonine dehydratases
           pyridoxal-phosphate attachment site
          Length = 364

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 201 RSQYSYNGPTLQTETHYCFTAEIGREVVPTRADSQEVLP 317
           R+ YSY   T    ++Y FTA  G  +  T  ++  +LP
Sbjct: 224 RAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNNASLLP 262


>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 231 LQTETHYCFTAEIGREVVPTRADSQEVLPPVKVPSDWPR 347
           L+   +YC   ++  E+ PT  + Q  +   + PS+W R
Sbjct: 391 LEHNNYYCPDCKVQHELTPTILEEQNSVFKKQSPSEWER 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,797
Number of Sequences: 28952
Number of extensions: 283195
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)