Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0034
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 329 3e-91
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 183 2e-47
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 183 2e-47
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 169 2e-43
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 38 0.001
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 34 0.017
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 30 0.36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.36
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.84
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.1
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.4
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 4.5
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 4.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.9
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 7.9
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 329 bits (808), Expect = 3e-91
Identities = 147/210 (70%), Positives = 171/210 (81%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDI 688
EPYNATLS+HQLVEN+DET+CIDNEAL I
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSI 210
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 183 bits (446), Expect = 2e-47
Identities = 86/217 (39%), Positives = 128/217 (58%), Gaps = 6/217 (2%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 220
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 221 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 400
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 401 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 580
SVL+ +R+ +++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 581 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDIC 217
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 183 bits (446), Expect = 2e-47
Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 232
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
+R+ +++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ L+ H ++ D T+ +DNE+ YDIC
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDIC 213
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 169 bits (412), Expect = 2e-43
Identities = 79/212 (37%), Positives = 128/212 (60%), Gaps = 3/212 (1%)
Frame = +2
Query: 62 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 241
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 242 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 415
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 416 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 592
+ +E++ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDI 688
VV+PYN+ L++ +L N D +DN AL I
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 38.3 bits (85), Expect = 0.001
Identities = 35/131 (26%), Positives = 66/131 (50%)
Frame = +3
Query: 300 SDRSSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSV 479
S S++ ++S S S P+T+ +T LSS + SS S+ + + +I +S+ S
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS----SS 280
Query: 480 AAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPT 659
++P + SS S S+PT + + T S + SS T+ S +S + PT
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTST-SSTISSSSSSSSSFSS--TLSSSSMSSSSSFSSSPT 337
Query: 660 ASTTRLYTTSA 692
+S++ + ++S+
Sbjct: 338 SSSSTISSSSS 348
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 34.3 bits (75), Expect = 0.017
Identities = 29/128 (22%), Positives = 63/128 (49%)
Frame = +3
Query: 309 SSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAP 488
+ V T+ S S +TT ++ SS T ++ S+ + + + + +S+ S ++
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 489 GPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTAST 668
+ SSS S S+ + S + + S P + SS+H+ S +S + ++P++S+
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS-SSSSSRPSSSS 238
Query: 669 TRLYTTSA 692
+ + T S+
Sbjct: 239 SFITTMSS 246
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.36
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +3
Query: 363 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 542
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 543 ES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRL 677
+ ++ P P + S+++ +R S L QT T+ T +
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR-SHSPVLLTPQTLSTSETKHI 320
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.36
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
Frame = +3
Query: 321 TTSFSDSPAPAT-TGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPV 497
+TS + P P T T DT L + + S S ++ +S+L P + P
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTST---SIPPTGGSSSLSTP-ITPTVPP 197
Query: 498 WAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRL 677
+ SS+ + T T S T T SP P T + T + +S L T PT T
Sbjct: 198 TSTSSTSIPIPPTSTSS-TDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256
Query: 678 YTTS 689
+TS
Sbjct: 257 SSTS 260
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +3
Query: 309 SSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAP 488
SS T+SFSD A + P+ T+ T S++ S + N ++ N PS P
Sbjct: 132 SSPATSSFSDPKAFSAGVPKFTSD------TSSTVSSTPSLNHSL----QNSMPPSTPTP 181
Query: 489 GPVWAPS 509
PVWAP+
Sbjct: 182 PPVWAPT 188
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +3
Query: 321 TTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVW 500
TTS++ + + A++ ++ SSLT SS ++ + N + ++ + S +A
Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSL 119
Query: 501 APSS-SQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTT 671
A SS + S+ S+ S + S SS + L+ ++ T PT+S T
Sbjct: 120 ASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSAT 177
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 362 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 451
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 98 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 199
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 293 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 394
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 300 SDRSSVRTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SA 422
S SS T+ S + + T P ++ V+SS++ SSM S+
Sbjct: 342 SSSSSASATATSSAESSIATSPITSSSNVVSSISTSSMDSS 382
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 435 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 530
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 42 KITYTK*GKSFIYRPANVV 98
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 5.9
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +3
Query: 318 RTTSFSDSPAPATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYR-ASNLHIPSVAAPGP 494
R SF PA + PR S + M N ++ AY+ + L P++ A
Sbjct: 627 RQYSFQPRPATPSNPPRSLPPP--SGQVNAPMSQTPNP-ISFAYQHGTPLATPTMRANSF 683
Query: 495 VWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNH 605
P+SS ++ T + HT PK T +S H
Sbjct: 684 NSYPASSAEPIRRPATTTVGHTPNLYSPKTNTYNSRH 720
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 314 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 445
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 351 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 256
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,570
Number of Sequences: 5004
Number of extensions: 57162
Number of successful extensions: 205
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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