Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0034
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 364 e-101
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 361 e-100
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 361 e-100
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 359 e-100
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 359 1e-99
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 359 1e-99
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 358 2e-99
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 357 4e-99
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 356 7e-99
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 188 3e-48
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 188 3e-48
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 186 1e-47
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 186 1e-47
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 184 4e-47
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 184 7e-47
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 184 7e-47
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 145 2e-35
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 145 3e-35
At4g37190.1 68417.m05265 expressed protein 33 0.18
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 30 1.3
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 29 2.9
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 29 2.9
At5g23395.1 68418.m02738 expressed protein 29 3.9
At2g28400.1 68415.m03451 expressed protein contains Pfam profile... 29 3.9
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 28 5.1
At3g62910.1 68416.m07067 peptide chain release factor, putative ... 28 6.8
At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SD... 28 6.8
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 8.9
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 364 bits (895), Expect = e-101
Identities = 165/212 (77%), Positives = 183/212 (86%), Gaps = 1/212 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 235
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 236 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 415
VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 416 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 595
VRKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
Query: 596 VEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDIC 212
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 361 bits (887), Expect = e-100
Identities = 163/211 (77%), Positives = 181/211 (85%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREI+H+Q GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
RKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDIC 691
EPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC 211
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 361 bits (887), Expect = e-100
Identities = 165/212 (77%), Positives = 181/212 (85%), Gaps = 1/212 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 235
MREI+H+Q GQCGNQIG+KFWE+I DEHGID TG Y GD+ DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 236 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 415
VPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 416 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTV 595
VRKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180
Query: 596 VEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDIC 212
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 359 bits (884), Expect = e-100
Identities = 165/211 (78%), Positives = 179/211 (84%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
RKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDIC 691
EPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC 211
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 359 bits (882), Expect = 1e-99
Identities = 163/211 (77%), Positives = 179/211 (84%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
RKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDIC 691
EPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC 211
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 359 bits (882), Expect = 1e-99
Identities = 163/211 (77%), Positives = 179/211 (84%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
RKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDIC 691
EPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC 211
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 358 bits (880), Expect = 2e-99
Identities = 165/211 (78%), Positives = 179/211 (84%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREI+H+Q GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
RKE+E+ DCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDIC 691
EPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC 211
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 357 bits (878), Expect = 4e-99
Identities = 162/211 (76%), Positives = 180/211 (85%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
RKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDIC 691
EPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC 211
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 356 bits (876), Expect = 7e-99
Identities = 161/211 (76%), Positives = 179/211 (84%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 238
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 239 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 418
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 419 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 598
RKE+E+CDCLQGFQ KIREEYPDR+M T+SV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 599 EPYNATLSVHQLVENTDETYCIDNEALYDIC 691
EPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDIC 211
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 188 bits (458), Expect = 3e-48
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 232
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
VRK +++C LQGF ++ +Y + +++ PSP+VS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 188 bits (458), Expect = 3e-48
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 232
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
VRK +++C LQGF ++ +Y + +++ PSP+VS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 186 bits (453), Expect = 1e-47
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 232
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
+RK +++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 186 bits (453), Expect = 1e-47
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 232
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
+RK +++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 184 bits (449), Expect = 4e-47
Identities = 85/213 (39%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 232
MREI+ + GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
+RK +++C LQGF ++ ++ + +++ PSP+VS
Sbjct: 121 RLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTA 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDIC 213
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 184 bits (447), Expect = 7e-47
Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 232
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
+RK +++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 184 bits (447), Expect = 7e-47
Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 232
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 233 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 412
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 413 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 592
+RK +++C LQGF ++ +Y + ++V PSP+VS +
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEALYDIC 691
VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 145 bits (352), Expect = 2e-35
Identities = 71/209 (33%), Positives = 117/209 (55%), Gaps = 3/209 (1%)
Frame = +2
Query: 62 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 241
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 242 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 415
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 416 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP-KVSDT 592
+ +E++ D L+GF + + Y +++ TYSV P+ + SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDV 181
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEAL 679
VV+PYN+ L++ +L N D +DN AL
Sbjct: 182 VVQPYNSLLTLKRLTLNADCVVVLDNTAL 210
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 145 bits (351), Expect = 3e-35
Identities = 71/209 (33%), Positives = 117/209 (55%), Gaps = 3/209 (1%)
Frame = +2
Query: 62 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 241
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 242 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 415
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 416 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSP-KVSDT 592
+ +E++ D L+GF + + Y +++ TYSV P+ + SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDV 181
Query: 593 VVEPYNATLSVHQLVENTDETYCIDNEAL 679
VV+PYN+ L++ +L N D +DN AL
Sbjct: 182 VVQPYNSLLTLKRLTLNADCVVVLDNTAL 210
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +2
Query: 59 MREIVHLQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 226
MREIV +Q G+ N +G+ FW + G+ DP + + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 227 GKYVPRAILVDLEP--GTMDS 283
Y PR + V+L+ GTM S
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +2
Query: 392 LVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 571
+++SV VVRKE+E+C+CLQ F RE D + Y V
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF--FVSGSFKVDSVEAKKKEENFRETLRDMANSKYEYVK 57
Query: 572 SPKVSDTVVEP 604
S ++ D V+ P
Sbjct: 58 SFELEDEVMLP 68
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = -3
Query: 364 GPVVAGAGLSENEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLAAGGF--IVVYID 197
GP G G + +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 196 ALQLQVRVPMVGTG 155
+LQLQV++ + +G
Sbjct: 391 SLQLQVQIMSMASG 404
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = -3
Query: 364 GPVVAGAGLSENEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLAAGGF--IVVYID 197
GP G G + +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 196 ALQLQVRVPMVGTG 155
+LQLQV++ + +G
Sbjct: 391 SLQLQVQIMSMASG 404
>At5g23395.1 68418.m02738 expressed protein
Length = 162
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 300 SDRSSVRTTSFSDSPAPATTGPRDT 374
SD +S+ TT+ +++P P+ PRD+
Sbjct: 6 SDENSIPTTTTTNTPPPSANSPRDS 30
>At2g28400.1 68415.m03451 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 162
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 58 NEGNRSSTGRPMW*PDWS*VLGDHLRRAR 144
++ ++++ P+ PDWS +LGD RR R
Sbjct: 68 SDSGKAASSLPVNVPDWSKILGDESRRQR 96
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 368 PWPSCCRRRTVRKRSCPDGRSVRKVPSGQSP 276
PW C + +RK+SCP+ +S +P G+ P
Sbjct: 434 PWE--CAKFFLRKQSCPNFKSFFYLPCGKDP 462
>At3g62910.1 68416.m07067 peptide chain release factor, putative
similar to peptide chain release factor 1 [Escherichia
coli] GI:147567; contains Pfam profiles PF00472:
Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
Length = 422
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 416 LHRGP----SQRAQHPLCSVPWPSCCRRRTVRKRSCPDGRSVRKVPSGQSPW 273
LH P S+++ +C V WP RRT R + +RK+ S + W
Sbjct: 17 LHSSPFTLRSRKSPSGVCLVSWPPSRSRRTRRLVCMAEPYLIRKMESVEKTW 68
>At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 289
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +3
Query: 429 QNLAIAYRASNLHIPSVAAPGPVWAP----SSSQRSVKSTPTES*THTQ*SP---RPKYQ 587
+ LA+ + + VA PGPVW P S S+ ++K +E+ P P Y
Sbjct: 205 RGLALQLAPKGIRVNGVA-PGPVWTPLIPASFSEEAIKQFGSETPMKRAAQPVEVAPSYV 263
Query: 588 TLSSNH 605
L+ NH
Sbjct: 264 FLACNH 269
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 65 EIVHLQAGQCGNQIGAKFWEIISD 136
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,985,456
Number of Sequences: 28952
Number of extensions: 335210
Number of successful extensions: 1081
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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