Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0033
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    45   9e-06
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    30   0.28 
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    27   2.0  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    27   3.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   4.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   4.5  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    26   6.0  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    26   6.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   6.0  

>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 39/173 (22%), Positives = 79/173 (45%)
 Frame = +2

Query: 176 STEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPR 355
           + E+EL E  K  +      N     +  L + +   +++ +  + +E+       +Q  
Sbjct: 27  TNEKELFEQAKRCLNICCGSNNFAKRNDVLFSLLDVAVSISSLELRKELISELYVPVQSL 86

Query: 356 VISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLY 535
             +  E + S    LA IYE  QN++   + L  +  + G  +  ++  L   +++   Y
Sbjct: 87  EEAPSEYLVSCCLQLATIYEAEQNFELLCSSLEAVE-KHGHFENDLEQLLLLRIRLGDAY 145

Query: 536 LEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQRY 694
           L++    +A   V  +  L  + +N+QL +  ++C AR LD   +F+EAA+ Y
Sbjct: 146 LKLGKAEKAILTVRTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAKCY 198


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
 Frame = +2

Query: 110 NSGGLHKDQAEKYR---NVLMEILKSTEQELS-----ESLKAFIEAIVNENVSLVIS--- 256
           NSG +H +Q E+Y    N+ +++L+ T+   S      S+K      +N  V L I    
Sbjct: 697 NSGTMHMEQLERYHASANIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSG 756

Query: 257 --RQLLTDVSTHLALLADNVSQE 319
             R L T +S   +LL D++SQ+
Sbjct: 757 IHRSLGTHISKTRSLLLDSLSQQ 779


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
 Frame = +2

Query: 218 EAIVNENV-SLVISRQLLTDVSTHLALL-ADNVSQEVSHFALDVIQPRVISFEEQ 376
           E+I+NE V    I+ +L  + +T+ A++  +N S +  H ALD+IQ R+   EE+
Sbjct: 422 ESIMNEAVCDQKITIRLPINSNTNEAVVECENKSMQSKH-ALDIIQERIKDLEEK 475


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = +2

Query: 218 EAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFA---LDVIQPRVISFEEQVASI 388
           E + +ENV  V++  L     T L LLA    +E+       +++IQ    +FE+ V+  
Sbjct: 42  EYLASENVKEVLNLFL-----TRLPLLAQAPEKELEPILAVFINLIQESA-AFEDHVSKF 95

Query: 389 RQHLADIYERNQNWKEAANVLVGIPLETGQKQ 484
            Q L  I ++N N   A   ++ I   T  K+
Sbjct: 96  CQALEQIADQNNNLTPAILSVLSILFNTAVKE 127


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 267 KSCLEITRLTFSLTIASMNAFNDSDNSCSVLFSISIR 157
           KS  E  +  FS+T  S+      ++ CS  F +S R
Sbjct: 26  KSSFEEKKHNFSITNKSLETLRSQESPCSTTFPVSDR 62


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 170  LKSTEQELSESLKAFIEAIVNENVSLVISRQLLTD 274
            L   + E+ ++ +  +EAI+ EN+ +++  Q L D
Sbjct: 957  LAKQKSEIEQAFQGDMEAIIAENLEIMVESQSLED 991


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 314 VKHYQPAVLSVCSHLSRVALKS-LGSHFH 231
           ++ Y  AVLS+CS L+R ++ S +  ++H
Sbjct: 155 IEQYLHAVLSLCSELARQSVNSVISGNYH 183


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 74  LQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 187
           +Q  R+YL  L     LH    E   NVL+E  +  +Q
Sbjct: 88  MQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQ 125


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
 Frame = -3

Query: 612 SLVVSACSNEALLTNASACTG--SSTSRYSLAIFRYVSSL*STEYCFCPVSNGIPTKTLA 439
           S + S  S+   LT++++ T   S+++  S A +   S L S+     P+S+   T   +
Sbjct: 243 SSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATS 302

Query: 438 AS---FQF*FRS*ISAKCCLILATCSSNEITLGCITSSAKWETSCETLSASSAKCVLTSV 268
           AS         +  ++     L++ SS   T    TSS    +   T + S++   LTSV
Sbjct: 303 ASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSV 362

Query: 267 KSCLEITRLTFSLTIASMNAFNDSDNSCSVLFSISIRT 154
            S    +  +  LT  S+N+ + +  S + L S +  T
Sbjct: 363 NSTTATSASSTPLT--SVNSTSATSASSTPLTSANSTT 398


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 140 EKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQE 319
           E+ R+VL   L++ E + + SL+    ++ N+  SL    + + +   HL LLA   S +
Sbjct: 434 EEERDVLESKLQTLEDD-NNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDK 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,638
Number of Sequences: 5004
Number of extensions: 58444
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)