Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0033
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9 signal... 95 6e-20
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z73424-4|CAA97778.2| 954|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical... 29 2.4
U58726-1|AAB00575.2| 215|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 28 7.4
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 28 7.4
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 27 9.8
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 27 9.8
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 27 9.8
>AC024826-18|AAF60803.1| 412|Caenorhabditis elegans Cop-9
signalosome subunit protein 4 protein.
Length = 412
Score = 94.7 bits (225), Expect = 6e-20
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 11/201 (5%)
Frame = +2
Query: 125 HKDQAEKYRNVLMEILKSTEQ---ELSESLKAFIEAIVNENVSLVISRQLLTDVSTHL-- 289
HK Q E + + L + +E +K I E S+V+SRQ ++ ++ L
Sbjct: 21 HKAQYEALAKLCNKYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERLDN 80
Query: 290 ALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLE 469
L + +S L +I+ R IS+E+QV +R LA +YE+ K+AA L+ I +
Sbjct: 81 QHLESECVKAISEGILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSD 140
Query: 470 T-----GQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAET-TNEQLQIYY 631
T G + K + ++I +L L+ + +AE +VNR S+L + N +QI +
Sbjct: 141 TSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQIEH 200
Query: 632 KVCYARVLDYRRKFIEAAQRY 694
K ARV D +R+F+EAAQRY
Sbjct: 201 KALQARVSDAKRRFVEAAQRY 221
>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
protein R07G3.3c protein.
Length = 1316
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +2
Query: 53 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 220
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 221 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 319
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
protein R07G3.3a protein.
Length = 1982
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +2
Query: 53 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 220
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 221 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 319
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
protein R07G3.3b protein.
Length = 1987
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +2
Query: 53 EIKMPVNLQSV-RQYLSELRNSGGLHKDQAEKYRNVLME---ILKSTEQELSESLKAFIE 220
EI+ LQ V + + E +N+ L KDQ E NVL+E +L+ + E+ A +
Sbjct: 259 EIRCQTELQRVMKSSMEESKNAADLFKDQLEAQENVLVEVRKVLQEHQDEMERENLAHAD 318
Query: 221 AIVNENVSLVISRQLLTDVSTHLALLAD---NVSQE 319
AI + + L +R L V+ + ++D NVS+E
Sbjct: 319 AIKHRDEELAQTRAELVKVTEMMKSMSDVKLNVSEE 354
>Z73424-4|CAA97778.2| 954|Caenorhabditis elegans Hypothetical
protein C44B9.1 protein.
Length = 954
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +2
Query: 137 AEKYRNVLM--EILKSTEQELSESLKAFIEAIVNENVSLVISR 259
+EKYR V E+L+ TEQ + L AF+EAI ++V+S+
Sbjct: 273 SEKYRFVYTAYEMLEKTEQVAEKLLTAFVEAIETTTSAVVLSK 315
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 30.3 bits (65), Expect = 1.4
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 4/188 (2%)
Frame = +2
Query: 77 QSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEL---SESLKAFIEAIVNENVSL 247
QS + EL +S D+ ++ L K + +EL +E +++ + N N
Sbjct: 408 QSALESSQELASSQ--KADKIQELEKELQNAQKRSSEELETANEMVRSLTATLENSNSET 465
Query: 248 VISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 427
I +Q L + L A +++ ++V+ + E+Q A I+ IY+
Sbjct: 466 EILKQKLETLDKELQ--ARQQTEKALTEEINVLTTSLAEKEQQTAQIQNLQTQIYQMEVE 523
Query: 428 WKEAANVLVGIPL-ETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAET 604
KE LV + L + Q S + L ++ L+ + +AEA + L AE
Sbjct: 524 -KEEKVELVKVQLQQAAQSSSSAEEALRAEIEQLEAKLKAVEQAKAEAL----NSLLAEK 578
Query: 605 TNEQLQIY 628
+ Q Q++
Sbjct: 579 EHLQAQLH 586
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 30.3 bits (65), Expect = 1.4
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 4/188 (2%)
Frame = +2
Query: 77 QSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQEL---SESLKAFIEAIVNENVSL 247
QS + EL +S D+ ++ L K + +EL +E +++ + N N
Sbjct: 408 QSALESSQELASSQ--KADKIQELEKELQNAQKRSSEELETANEMVRSLTATLENSNSET 465
Query: 248 VISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQN 427
I +Q L + L A +++ ++V+ + E+Q A I+ IY+
Sbjct: 466 EILKQKLETLDKELQ--ARQQTEKALTEEINVLTTSLAEKEQQTAQIQNLQTQIYQMEVE 523
Query: 428 WKEAANVLVGIPL-ETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAET 604
KE LV + L + Q S + L ++ L+ + +AEA + L AE
Sbjct: 524 -KEEKVELVKVQLQQAAQSSSSAEEALRAEIEQLEAKLKAVEQAKAEAL----NSLLAEK 578
Query: 605 TNEQLQIY 628
+ Q Q++
Sbjct: 579 EHLQAQLH 586
>AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical
protein Y69A2AR.6 protein.
Length = 245
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 185 QELSESLKAFIEAIVN-ENVSLVISRQLLTDVSTHLAL-LADNVSQEVSHFALDVIQPRV 358
+E E L + I +I++ N+ +VI++ D+ HL + + Q F Q R+
Sbjct: 98 EEALEFLNSKIRSIMDYSNIQMVIAQSNAYDLLGHLQPDILKFIKQHNETFPT-AQQQRM 156
Query: 359 ISFEEQVASIRQHLADIYER 418
I QV +RQ +AD ER
Sbjct: 157 IDIRRQVDDVRQVMADNVER 176
>U58726-1|AAB00575.2| 215|Caenorhabditis elegans Hypothetical
protein T01C8.3 protein.
Length = 215
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 351 GCITSSAKWETSCETLSASSAKCVLTSVKSCLEITRL 241
GC TS C T S S C+ S C E+T +
Sbjct: 7 GCFTSPTDLPLGCSTNSRGSIFCICNSTDYCNEMTNV 43
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 503 LETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYRRKF 673
LET +A YLE ++ ++ +A+L+Q + Q+ I C R +Y+R F
Sbjct: 609 LETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMMI--ASCLRRTGNYQRAF 663
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 503 LETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYRRKF 673
LET +A YLE ++ ++ +A+L+Q + Q+ I C R +Y+R F
Sbjct: 609 LETVEWLASYYLETQFSEKSINYLEKAALMQPNVSKWQMMI--ASCLRRTGNYQRAF 663
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 27.5 bits (58), Expect = 9.8
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Frame = +2
Query: 128 KDQAEKYRNVLMEILKSTEQELSES-----LKAFIEAIVNENVSLVISRQLLTDVSTHLA 292
+ +AEK R + E L+S +QEL ES L + ++A +E + + +QL V +
Sbjct: 1144 RQKAEKARRDMAEELESYKQELEESNDKTVLHSQLKAKRDEEYA-HLQKQLEETVKSSEE 1202
Query: 293 LLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLET 472
++ + +Q + ++ + + + Q S + + N+N++ + + LE
Sbjct: 1203 VVEEMKAQ--NQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSNIASARLEA 1260
Query: 473 GQKQYSVDYKL-ETYLKIARLYLEVDDPVQAEAFVNR--ASLLQAETTNEQL 619
+K+ + + L E K+ + +DD + + +N S+ +A++ +E L
Sbjct: 1261 EKKRKAAETSLMEKDHKMREMQSNLDDLMAKLSKMNNELESIQKAKSADETL 1312
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 27.5 bits (58), Expect = 9.8
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Frame = +2
Query: 128 KDQAEKYRNVLMEILKSTEQELSES-----LKAFIEAIVNENVSLVISRQLLTDVSTHLA 292
+ +AEK R + E L+S +QEL ES L + ++A +E + + +QL V +
Sbjct: 1144 RQKAEKARRDMAEELESYKQELEESNDKTVLHSQLKAKRDEEYA-HLQKQLEETVKSSEE 1202
Query: 293 LLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLET 472
++ + +Q + ++ + + + Q S + + N+N++ + + LE
Sbjct: 1203 VVEEMKAQ--NQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSNIASARLEA 1260
Query: 473 GQKQYSVDYKL-ETYLKIARLYLEVDDPVQAEAFVNR--ASLLQAETTNEQL 619
+K+ + + L E K+ + +DD + + +N S+ +A++ +E L
Sbjct: 1261 EKKRKAAETSLMEKDHKMREMQSNLDDLMAKLSKMNNELESIQKAKSADETL 1312
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 27.5 bits (58), Expect = 9.8
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Frame = +2
Query: 128 KDQAEKYRNVLMEILKSTEQELSES-----LKAFIEAIVNENVSLVISRQLLTDVSTHLA 292
+ +AEK R + E L+S +QEL ES L + ++A +E + + +QL V +
Sbjct: 1144 RQKAEKARRDMAEELESYKQELEESNDKTVLHSQLKAKRDEEYA-HLQKQLEETVKSSEE 1202
Query: 293 LLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLET 472
++ + +Q + ++ + + + Q S + + N+N++ + + LE
Sbjct: 1203 VVEEMKAQ--NQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSNIASARLEA 1260
Query: 473 GQKQYSVDYKL-ETYLKIARLYLEVDDPVQAEAFVNR--ASLLQAETTNEQL 619
+K+ + + L E K+ + +DD + + +N S+ +A++ +E L
Sbjct: 1261 EKKRKAAETSLMEKDHKMREMQSNLDDLMAKLSKMNNELESIQKAKSADETL 1312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,551
Number of Sequences: 27780
Number of extensions: 333741
Number of successful extensions: 1043
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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