Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0032
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   0.92 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   4.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.5  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   8.6  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 377 PPGVKWLLEPIDIYNVNEPHTLRYSSKVSV*SQRL 273
           P G+  LL+P++  N+ EP  ++   KV++   RL
Sbjct: 845 PEGIT-LLDPVENMNIKEPTFIKLMKKVNILESRL 878


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 172 ITQIIILRV*FLLHDVIPSPWKSIVNI 92
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 138 KNQTRKIIICVITGGRT 188
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 62  GTRQRDSNTSAWLDTN 15
           GTR+ +SNTS W + N
Sbjct: 157 GTREENSNTSDWDEQN 172


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 392 GRAHSPPGVKWLLEPIDIYN 333
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,695
Number of Sequences: 5004
Number of extensions: 35548
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)