Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0030
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    31   0.49 
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   4.5  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   4.5  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   4.5  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    27   7.9  
At1g50910.1 68414.m05724 expressed protein                             27   7.9  

>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 131 WVCGGTSVPSVFYTVCSMGSALRNCSR*YQHLVFTIAPAATGVEFIHTTW 280
           WV G   +P + + V  +  A+  C R  +H+ F    A   + F+ TTW
Sbjct: 374 WVLGQIYIPEINWVVMILTLAVTICFRDTRHIAFAFGLACMTLAFV-TTW 422


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 118 CMEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYH 237
           C  P  L   + +  I  +MFH EC E  FE+I  S  +H
Sbjct: 94  CGRPT-LSATYYACLICEKMFHKECVESPFEIIHPSHPFH 132


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 293 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPS 394
           HP   S     H PSG   SSPP   P  +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 293 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPS 394
           HP   S     H PSG   SSPP   P  +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 516 GRRAYGPPDGEWLP-SPMDFSNARGRA 439
           G + Y P  GEW+  SP+D     GRA
Sbjct: 855 GTQVYNPERGEWMELSPLDVMQMIGRA 881


>At1g50910.1 68414.m05724 expressed protein
          Length = 552

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 479 YRRPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG-KKD 315
           +R    + +P   PS  +  NT+ +P LKK  +    +  E   F++ ++RG +KD
Sbjct: 495 FRATKVAFLPVKRPSSAITPNTIEQPPLKKQET-GEKDKKEEDGFYNLLIRGTQKD 549


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,254
Number of Sequences: 28952
Number of extensions: 316439
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)