Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0029
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 30 0.35
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 28 1.4
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 28 1.4
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 2.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.3
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 26 5.7
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 7.6
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 7.6
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 10.0
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 10.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 10.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 25 10.0
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 29.9 bits (64), Expect = 0.35
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 35 LTVQEFDSKNSEVVKKEIDAVLPTDVKVTTEHI 133
+TV F KN+EV++ I ++ T +++TT+ +
Sbjct: 730 MTVNVFPEKNAEVLRPHISYIISTSLELTTDAV 762
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/88 (25%), Positives = 30/88 (34%)
Frame = +2
Query: 263 DSIEISQEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLEKPVEDTGSVXXX 442
D +EI + T KSI D D + D P+ L + E ED ++
Sbjct: 81 DKVEIEERSIRSTPKSIGDDDLENREGSFDAPEGILTHGKHRLPTIPEWTKEDLAALSEA 140
Query: 443 XXXXXXXXXXXRGYEPEDISIAPAATPD 526
PEDI P+ PD
Sbjct: 141 AARLQANP------SPEDIETDPSMVPD 162
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 53 DSKNSEVVKKEIDAVLPTDVKVTTEHITKEQIVSPVIEKESRIENKAEEP 202
+ K ++ KE++++ +K +EH K I P+ EK + + +K P
Sbjct: 108 NDKELKIKLKEVESIRSDLLKCMSEHPDKSLICHPLAEKFAILASKLHNP 157
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 257 GSDSIEISQEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLEKPV 415
G+D +E+ D + ++ + ++ S D+ + EE+LEKPV
Sbjct: 142 GADEFSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEILEKPV 194
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 651 LTGSISSGNVIDESSTSVVLNFGY 580
LTG+ S+G VID N+GY
Sbjct: 218 LTGTPSNGTVIDTVEVPTTTNYGY 241
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 651 LTGSISSGNVIDESSTSVVLNFGY 580
LTG+ S+G VID N+GY
Sbjct: 296 LTGAPSNGTVIDTVEVPTTTNYGY 319
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 651 LTGSISSGNVIDESSTSVVLNFGY 580
LTG+ S+G VID N+GY
Sbjct: 374 LTGAPSNGTVIDTVEVPTTTNYGY 397
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 651 LTGSISSGNVIDESSTSVVLNFGY 580
LTG+ S+G VID N+GY
Sbjct: 530 LTGAPSNGTVIDTVEVPTTTNYGY 553
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 651 LTGSISSGNVIDESSTSVVLNFGY 580
LTG+ S+G VID N+GY
Sbjct: 608 LTGAPSNGTVIDTVEVPTTTNYGY 631
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 651 LTGSISSGNVIDESSTSVVLNFGY 580
LTG+ S+G VID N+GY
Sbjct: 452 LTGAPSNGTVIDTVEIPTTTNYGY 475
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 35 LTVQEFDSKNSEVVKKEIDAVLPT-DVKVTTEHITKEQIVSPVIEKESRIE 184
L+ +EF + +++V+++ DA+ T D+K+ + ++ S V+ K SR+E
Sbjct: 33 LSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNK-SRLE 82
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 672 FFLSFVFLTGSISSGNVIDESSTSVVLNFGY 580
+F+ + TG SG+ DE STS NF Y
Sbjct: 513 WFVGHSWATGIFESGDGKDEESTSEDFNFLY 543
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +2
Query: 326 SSSLSHYVDLPKSPLAD---SPKPT 391
SS+LS +D+P SPL + SP+PT
Sbjct: 517 SSNLSINIDIPPSPLQNTVISPQPT 541
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 560 GVSEETTY-PKLSTTDVEDSSITLPEDIE 643
GVS+ ++ K+ +T ++DSS P DIE
Sbjct: 576 GVSDAKSFVKKIKSTYIDDSSSNSPSDIE 604
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 32 DLTVQEFDSKNSEVVKKEIDAVLPTDVKVTTEHITKEQIVSPVIEKESR 178
+ + FDS S + + +D VLP +K+ EQ +S + E SR
Sbjct: 2004 ETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISR 2052
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 56 SKNSEVVKKEIDAVLPTDVKVTTEHITKEQIVSPVIEKES 175
SK+S + + + +L TD V E + EQ+ PV KES
Sbjct: 436 SKDSHLQENQPTDIL-TDESVIAEDVKLEQVFKPVGIKES 474
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 14 KPKVQLDLTVQEFDSKNSEVVKKEIDAVLPTD 109
KP VQ DL V FD + + K I+ V D
Sbjct: 581 KPNVQNDLDVSNFDKEFTNTNVKNINIVSNVD 612
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 420 SSTGFSNNSSVGLGESARGDFG 355
S GF NS G G +RG FG
Sbjct: 150 SRGGFGGNSRGGFGGGSRGGFG 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,712
Number of Sequences: 5004
Number of extensions: 31532
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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