Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0029
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981...    29   4.5  
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414...    29   4.5  
02_02_0445 - 10351483-10351606,10351987-10353170                       29   4.5  
08_02_0718 + 20382323-20385046                                         28   7.8  

>08_02_1331 +
           26195949-26196132,26196606-26196710,26197270-26198127,
           26198669-26199458,26200240-26200329,26200636-26200712,
           26200797-26201383
          Length = 896

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 53  DSKNSEVVKKEIDAVLP---TDVKVTTEHITKEQIVSPVIEKESRIENKA 193
           D KN   V+ E+        + VKVTTE   K QI   V +K   IE+ A
Sbjct: 463 DEKNDSAVQPEVSTEAKRTTSSVKVTTEDKGKTQISDVVYDKAQDIESLA 512


>04_04_0285 - 24136865-24137000,24137554-24137611,24138142-24141480,
            24141789-24142218,24142861-24142928,24143015-24143165
          Length = 1393

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 260  SDSIEISQEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLEKPVEDTGS 430
            +D    ++ +    E+++ + +  S    VDL +S LAD+ KP + L    +E T S
Sbjct: 1020 NDQYVSAENKENGREETVREVEDESNKREVDL-QSQLADNAKPNDLLQSHHIEKTTS 1075


>02_02_0445 - 10351483-10351606,10351987-10353170
          Length = 435

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +2

Query: 41  VQEFDSKNSEVVKKEIDAVLPTDVKVTTEHITKEQIVSPVIEKESRIEN 187
           ++E + +  E+VKK ++A      ++  E I KE+ +   + +E+ IE+
Sbjct: 198 LEEEERQLEELVKKRLEARKIETRQIVVEEIRKEEHIEKTLNEEANIED 246


>08_02_0718 + 20382323-20385046
          Length = 907

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 102 GKTASISFLTTSE-FLESNSCT-VRSSCTFGLTSV 4
           G    +S + T++ FLE NSCT +R+   FG +S+
Sbjct: 519 GNVRRLSIINTNDDFLEDNSCTNLRTLFVFGASSI 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,968
Number of Sequences: 37544
Number of extensions: 174860
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)