Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0029
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.0  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   2.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 341 DSEKNYLYQQCFFQYLFVVPAIF 273
           D E   ++  C F + +V+P IF
Sbjct: 213 DDEDTKVFVTCIFIWAYVIPLIF 235


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 341 DSEKNYLYQQCFFQYLFVVPAIF 273
           D E   ++  C F + +V+P IF
Sbjct: 213 DDEDTKVFVTCIFIWAYVIPLIF 235


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -3

Query: 365 VILVNLRNDS 336
           VILVNLRNDS
Sbjct: 80  VILVNLRNDS 89


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 560 GVSEETTYPKLSTTDVEDSSITLPEDIEP 646
           G +     P+LSTTD + S+I L  DI P
Sbjct: 223 GATPRKAPPQLSTTDKKGSAIDL--DIGP 249


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 486 NPRIYLLHLRLHQTRERNKRNVSNTELVKKLH 581
           N +IY  H  LH+    +  +++ + L++ LH
Sbjct: 121 NGKIYANHCELHRAACHSGSSLTKSRLMRCLH 152


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 35  LTVQEFDSKNSEVVKKEIDAVLPTDVKVTTEHITKEQIVSPVI 163
           L V+ FDS+  E +KK  DA +  + +     I  ++I   +I
Sbjct: 12  LVVKTFDSETWEAIKK--DAAVNMEGQFLVRQIYDDEITYNII 52


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 35  LTVQEFDSKNSEVVKKEIDAVLPTDVKVTTEHITKEQIVSPVI 163
           L V+ FDS+  E +KK  DA +  + +     I  ++I   +I
Sbjct: 12  LVVKTFDSETWEAIKK--DAAVNMEGQFLVRQIYDDEITYNII 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,408
Number of Sequences: 438
Number of extensions: 2715
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)