Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0029
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10490.1 68418.m01215 mechanosensitive ion channel domain-con...    30   1.6  
At3g28350.1 68416.m03543 hypothetical protein                          29   3.8  
At2g02910.1 68415.m00240 expressed protein contains Pfam profile...    29   3.8  
At1g69650.1 68414.m08015 meprin and TRAF homology domain-contain...    29   3.8  
At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family pr...    28   5.0  
At5g39785.2 68418.m04819 expressed protein                             28   6.6  
At5g39785.1 68418.m04818 expressed protein                             28   6.6  
At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /...    28   6.6  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    27   8.7  

>At5g10490.1 68418.m01215 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 519

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 281 QEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLEKPV 415
           QE +    KS  +T S  L   V + +SP++D+ K  EE + KPV
Sbjct: 358 QENKGSNPKS-KETSSPDLKANVKVGESPVSDTNKVPEETVAKPV 401


>At3g28350.1 68416.m03543 hypothetical protein
          Length = 290

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 5   TEVKPKVQLDLTVQEFDSKNSEVVKKEIDAVLPTDVKVTTEHITKEQIVSPVIEKE 172
           TE    VQ+DL    F  KNS + +K+ D  + TD+  T     KE  +S +  +E
Sbjct: 192 TEKTNSVQVDLP---FFQKNSSLDRKQADVRVGTDIGFTRGGAAKEMPMSTMPSRE 244


>At2g02910.1 68415.m00240 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 460

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 511 RCNRYILGFISSFFYSCFRFDNRRLDHGACILYRFFQ 401
           + + + L F+S FF+SC    ++ L HG+  L  F Q
Sbjct: 43  KLSHFFLFFVSLFFFSCMFSGHKLLFHGSEFLPHFEQ 79


>At1g69650.1 68414.m08015 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 294

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 296 DTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLE 406
           D   ++ D  S  +S YV+L  S L +S  PTE   E
Sbjct: 55  DITGNVKDNGSGFISMYVELDSSSLMESKPPTEVFAE 91


>At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family
           protein contains Pfam profile PF00483: Nucleotidyl
           transferase; low similarity to mannose-1-phosphate
           guanylyltransferase [Hypocrea jecorina] GI:3323397
          Length = 406

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 269 IEISQEQRTDTEKSIADTDSSSLSHYVDLPKSPLAD 376
           I++S E  +   + IAD D+  L HY + P++ ++D
Sbjct: 145 IKVSAEAASQFGELIADPDTKELLHYTEKPETFVSD 180


>At5g39785.2 68418.m04819 expressed protein
          Length = 607

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 99  KTASISFLTTSEFLESNSCTVRSSCTF 19
           K   I FLT  +FLES+S  V SS TF
Sbjct: 130 KKKKIRFLTEEDFLESDSDFVDSSQTF 156


>At5g39785.1 68418.m04818 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 99  KTASISFLTTSEFLESNSCTVRSSCTF 19
           K   I FLT  +FLES+S  V SS TF
Sbjct: 130 KKKKIRFLTEEDFLESDSDFVDSSQTF 156


>At4g18180.1 68417.m02701 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 414

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 675 FFFLSFVFLTGSISSGNVIDESSTSVV 595
           FFF  FV L+ S  +GN++D+SS  +V
Sbjct: 10  FFFFIFVILSPS-EAGNIVDKSSVFLV 35


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 281 QEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLEKPVE 418
           QE+RT   + I+  D+S      D       +   P E+ LEKPVE
Sbjct: 103 QERRTKAAEGISVPDNSQGQSDKDTSIPETDEKVSPPEKKLEKPVE 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,009,307
Number of Sequences: 28952
Number of extensions: 157284
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)