Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0028
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    27   2.5  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   7.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   7.8  

>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +2

Query: 284 HSAQASCSFCELILNASFNSKP----EPVSI*YED*YSNFEYYYYLVRVLHVISLFYSFS 451
           HSA+ +C    + L  SFN+ P    + +++ Y +  SN E Y+   +++ +  +FY+  
Sbjct: 112 HSAKQNCDVEVVYLGGSFNAFPPLQNDRITVVYMNELSN-ESYHRSAQLMELDEMFYNLQ 170

Query: 452 QRI 460
             +
Sbjct: 171 STL 173


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 541 PCESPTHAMTFNMAVTRREFFAHEFKIFND 630
           P ES  +   FN+ +   E +A +FKI+ +
Sbjct: 68  PRESSKNNKWFNLEIVETELYAEQFKIWKN 97


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 228 CVSCPSTCCRASGKGSTSS 284
           CV C +T C  SGKGS ++
Sbjct: 113 CVDCFATFCDNSGKGSPAT 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,392
Number of Sequences: 5004
Number of extensions: 55594
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)