Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0028
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical pr...    32   0.33 
Z82269-8|CAJ76946.1|  185|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL021487-16|CAJ76947.1|  185|Caenorhabditis elegans Hypothetical...    27   9.5  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    27   9.5  
AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical...    27   9.5  

>U41277-5|AAA82476.2|  230|Caenorhabditis elegans Hypothetical
           protein C06E4.7 protein.
          Length = 230

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 96  ISRSVAYLRCRCL-WASVTSQHQVGCELVQPHKKKKKTYL*NFH*CVSCPSTCCRASGKG 272
           I+ SVA  +C C  W   ++Q  +GCELV       +T    F   + C S     SG  
Sbjct: 26  INLSVAERQCICASWEKASTQSDIGCELVARLLNDNRT---RFRALLECKSGSFLGSGNY 82

Query: 273 STSSIRPRPVAR 308
           +T  +     AR
Sbjct: 83  TTEDVNGMKRAR 94


>Z82269-8|CAJ76946.1|  185|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13c protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 312 QNEQLAWAEWNSSNLYQKHDSTWKGKI 232
           ++E   W + +   L +KH++TWKG++
Sbjct: 111 KDENWKWRDESGRLLDEKHNNTWKGEL 137


>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 312 QNEQLAWAEWNSSNLYQKHDSTWKGKI 232
           ++E   W + +   L +KH++TWKG++
Sbjct: 544 KDENWKWRDESGRLLDEKHNNTWKGEL 570


>Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 312 QNEQLAWAEWNSSNLYQKHDSTWKGKI 232
           ++E   W + +   L +KH++TWKG++
Sbjct: 559 KDENWKWRDESGRLLDEKHNNTWKGEL 585


>AL021487-16|CAJ76947.1|  185|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13c protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 312 QNEQLAWAEWNSSNLYQKHDSTWKGKI 232
           ++E   W + +   L +KH++TWKG++
Sbjct: 111 KDENWKWRDESGRLLDEKHNNTWKGEL 137


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 312 QNEQLAWAEWNSSNLYQKHDSTWKGKI 232
           ++E   W + +   L +KH++TWKG++
Sbjct: 544 KDENWKWRDESGRLLDEKHNNTWKGEL 570


>AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 312 QNEQLAWAEWNSSNLYQKHDSTWKGKI 232
           ++E   W + +   L +KH++TWKG++
Sbjct: 559 KDENWKWRDESGRLLDEKHNNTWKGEL 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,859
Number of Sequences: 27780
Number of extensions: 321637
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)