Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0028
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16250.1 68414.m01946 kelch repeat-containing F-box family pr...    29   2.2  
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...    28   6.7  
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ...    27   8.8  

>At1g16250.1 68414.m01946 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 383

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 351 SGLELNDAFKISSQNEQLAWAEWNSSNLYQKHDSTW 244
           SGL     F + S  +Q+ +AE NSS ++   D TW
Sbjct: 208 SGLSYRGCFHVLS--DQVGFAEQNSSEVFNPRDMTW 241


>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = +2

Query: 569 LSIWRSP---DENFSLMSLRSLMT----SYC*TIAYRYYH 667
           L +WR      EN  + +LRS+++    +YC TI Y Y H
Sbjct: 173 LGVWRMSGFLSENRPVQTLRSILSRLEQAYCGTIGYEYMH 212


>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
           (UBP20) identical to ubiquitin-specific protease 20
           GI:11993480 [Arabidopsis thaliana]
          Length = 695

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 524 CMSHRTGFGGEALPRQVFSGRL 459
           C S RT F G+   + VFSGRL
Sbjct: 279 CGSDRTSFRGDITSQDVFSGRL 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,584,130
Number of Sequences: 28952
Number of extensions: 300069
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)