Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0027
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    49   1e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.6  
UniRef50_Q11UK4 Cluster: Putative uncharacterized protein; n=1; ...    33   8.5  
UniRef50_P54602 Cluster: Endonuclease yhcR precursor; n=3; Bacil...    33   8.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = -3

Query: 649 YLLLRWLDEFTAHLVLSGYWSP 584
           +LLLRW+DE TAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 461 AGWWYVLARSHKRSYHQ 411
           A WWY+ AR+HKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q11UK4 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 352

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -1

Query: 174 IDLATIYFQKMLFFSVFSIINSSRHLLANNNTIFLN*GQ 58
           IDL ++Y++K ++ S+  ++  ++ +  NN T+FL  G+
Sbjct: 198 IDLMSLYYKKQMYDSIMPLLIKAKRMRPNNPTLFLYEGK 236


>UniRef50_P54602 Cluster: Endonuclease yhcR precursor; n=3;
           Bacillus|Rep: Endonuclease yhcR precursor - Bacillus
           subtilis
          Length = 1217

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 433 DRASTYHHPAYFCREAELRFGLKGGAAVVTILRPYN-LYLKVGGASK 570
           D   TYH P     E +LRFG K    + T+L P + + +KVG  +K
Sbjct: 409 DAPETYHTPKNDADENQLRFGKKASDYLKTVLSPGDKITVKVGSEAK 455


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,195,351
Number of Sequences: 1657284
Number of extensions: 13467574
Number of successful extensions: 25343
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25320
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)