Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0027
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.43 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    25   0.57 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 492 RFEGRGSRCNYTETLQLISQGGWRI 566
           ++ G      Y E ++L  +GGW++
Sbjct: 289 KYTGEAGMLGYNEIVELQKEGGWKV 313


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 433 LTRGPTTSKYQTVVSNIKLLMSTPNE 356
           +T+   TSK Q +V NI+  +S PN+
Sbjct: 111 VTKTSETSKLQQLVDNIEHKLSDPNQ 136


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 499 SNRNAVLLHDRNRQGGGTYSRGLTRGPTTSKYQTVVSN 386
           + + AV L+DR +Q  GT      +   + KY  VV+N
Sbjct: 274 TRKQAVTLNDRVKQVAGTLIIREAKVEDSGKYLCVVNN 311


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 486 AFRFEGRGSRCNYTETLQLISQGGW 560
           A R+ G      Y E ++  + GGW
Sbjct: 291 AGRYTGERGMMGYNEIVEAQNAGGW 315


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 433 DRASTYHHPAYFC 471
           DRAS YH+ A  C
Sbjct: 193 DRASGYHYNALTC 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,452
Number of Sequences: 336
Number of extensions: 3625
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)