Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0027
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161...    29   2.6  
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410           28   6.0  
07_01_0007 - 47999-48379,48496-48711,48794-48918,49031-49220,494...    28   7.9  

>03_06_0753 +
           36015026-36015256,36015780-36015885,36016132-36016192,
           36016278-36016573,36016654-36016793,36016880-36016954,
           36017044-36017134,36017677-36017880,36018409-36018453,
           36018745-36018830
          Length = 444

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -2

Query: 515 TAAPPFKPKRSSASRQK*AGWWYVLARSHKRSYHQ*ISNCCIKHQIVDVNTKR 357
           TAA P +PK+   S Q          + H+RS+H    +   KH  +DVNT R
Sbjct: 46  TAAAPDQPKQVRPSNQNQP------KKGHQRSHHAVDKDAAKKHHHLDVNTLR 92


>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
          Length = 1044

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 214 FIKFSIQGISGAINRSSYDLFSENVVFFGVFNNQL---FPTSIG 92
           ++  S   +SGA+N S Y++ S  + F G+ NN L    P  IG
Sbjct: 289 YLDLSYNNLSGAVNPSIYNMSS--ISFLGLANNNLEGMMPPDIG 330


>07_01_0007 -
           47999-48379,48496-48711,48794-48918,49031-49220,
           49465-49559,49807-49954
          Length = 384

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 165 LDRFIAPEIPCILNFMKIVGAVSEIQIIYRYINKQELLV*RYKI 296
           ++  +A  +P + +FM + GA+S   + +   N   L+V R+K+
Sbjct: 298 VNTLVAAMLPFLGDFMSLTGALSTFPLTFVLANHMYLMVKRHKL 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,607,284
Number of Sequences: 37544
Number of extensions: 360093
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)