Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0027
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 617 SPPGVKWLLEPIGIYDLDAPPTLRYKL*GLSIVTTAAPPFKPKRSSASRQK 465
           +P   K  + P  +    APPT+R  +   ++ TT APP      S S  K
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPPTMKTTRSPSTMK 53


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 493 RNAVLLHDRNRQGGGTYSRGLTRGPTTSKYQTVVSNIKLLMST 365
           R+ + LH +  +  GTYSR +    + S   T+V +++L+ +T
Sbjct: 458 RSLIGLHIKTLELKGTYSRSIQLFGSLSNVDTIVLDVELVQTT 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,816
Number of Sequences: 27780
Number of extensions: 325083
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)