Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0027
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         27   0.22 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    27   0.22 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    27   0.22 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.2  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 210 MKIVGAVSEIQIIYRYINKQELLV*RYKIIKS-*NIFDLNDI 332
           MKI  A+  + I  RYIN++ +LV   K+ K   N F+ +D+
Sbjct: 357 MKIKEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDV 398


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 210 MKIVGAVSEIQIIYRYINKQELLV*RYKIIKS-*NIFDLNDI 332
           MKI  A+  + I  RYIN++ +LV   K+ K   N F+ +D+
Sbjct: 357 MKIKEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDV 398


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 210 MKIVGAVSEIQIIYRYINKQELLV*RYKIIKS-*NIFDLNDI 332
           MKI  A+  + I  RYIN++ +LV   K+ K   N F+ +D+
Sbjct: 357 MKIKEALPHVPIFDRYINREYILVLSNKMQKMVNNDFNFDDV 398


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 297 LSYTFKRAILVY*YTYI*SESRKRLQR 217
           + Y F   +++Y YT I  E R+R ++
Sbjct: 211 MMYWFPLVVIIYTYTSILLEIRRRSKK 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,755
Number of Sequences: 438
Number of extensions: 4266
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)