Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0026
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.5  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 431 GGVCAPTTEWDARSDVRRATPFEEH 357
           GGVC P T W    D R   P+ +H
Sbjct: 478 GGVCDPYTPWHTFYDYR---PWVQH 499



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +1

Query: 19 TWECQTDSCSSY 54
          TW+C+   C  Y
Sbjct: 45 TWKCENQKCVKY 56


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 166  NNNGESAEPCGTPAVS*RGRERVPSTRYRNERFDKKSRMMSTSLSGTP 23
            ++NG   E    P+VS     R P+  +        +   S+  SGTP
Sbjct: 899  HSNGAKEEDEDKPSVSPLTSPRQPAETHAGSPCRNSASPASSDRSGTP 946


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,278
Number of Sequences: 336
Number of extensions: 3897
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)