Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0026
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 33 0.21
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 31 0.86
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 1.5
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 3.5
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 4.6
03_05_0431 + 24221881-24224586 29 4.6
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 6.0
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 28 8.0
02_01_0035 - 220036-221419,222050-222801 28 8.0
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 81 RYRVEGTRSRPRQLTAGVPQGSALSPLLFSL---------YINDIPRSPETHLALFADDT 233
R + GT S P + G+ QG LSPLLF L +N R+P +L+ADD
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVLKAMSAGLLDKVNQWSRAPNN--SLYADDA 273
Query: 234 AIYY 245
I++
Sbjct: 274 VIFF 277
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 269 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 409
SS DRS+ P P+ +R PH + SG+ +K S S+ + + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 458 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 360
++E G GGG P ++ D+RS RR+T F+E
Sbjct: 3 SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 243 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 377
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 96 GTRSRPRQLTAGVPQGSALSP 158
G RSRPR+ AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 556 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 461
AR+RTVF WG +V + + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 278 TPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 409
+P RS H P + QP+ S LQ P H +P P
Sbjct: 45 SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +3
Query: 234 AIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRS 413
AI CR RRL A A + +WRID N +AA +R S+P S
Sbjct: 32 AIRCCCRAQQEPRRRLSKAAAAAPERTEEWRIDGN-KPAAAARGRRRASLTAMPSLPFPS 90
Query: 414 RRA 422
R+
Sbjct: 91 PRS 93
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 296 HPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHP 403
HP + + HQ H+++ + +P HH HP
Sbjct: 105 HPHLQLFHEQHHHQKHQQQPPPPARWAPQHHHHHHP 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,778,831
Number of Sequences: 37544
Number of extensions: 509567
Number of successful extensions: 1457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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