Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0026
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    89   3e-18
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    73   2e-13
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    65   5e-11
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    61   8e-10
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    34   0.083
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 2/225 (0%)
 Frame = +3

Query: 9   KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDI 188
           KL ++     L++ + +FLSNRSFR R+  T S  +  T GVPQG+ LSPLLF +Y+NDI
Sbjct: 36  KLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDI 95

Query: 189 PRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVL 362
                  +A   FADDT +Y S  K       LQ A+  +  W +  ++ +N +K     
Sbjct: 96  SSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLTLNQSK----- 149

Query: 363 FKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKT 542
                    T  + +  RR +        L G PI   +  + LG  +   + F  H + 
Sbjct: 150 ---------TVHVTVGKRRIDFK----YHLDGYPIERKAITRDLGFLISEKLDFSDHWRK 196

Query: 543 VRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVV 677
             + A F L  ++    + +K   +  + LYKT IRP + Y +VV
Sbjct: 197 CINLAKFQLANMFNKYSTSNK---KLMILLYKTFIRPRLEYGTVV 238


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 3/228 (1%)
 Frame = +3

Query: 9    KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPLLFSLYIND 185
            KL   G+        ++FL NR+F  ++    S+    +++GVPQGS   PLLF L+IN+
Sbjct: 839  KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898

Query: 186  --IPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAV 359
              I  +P  +++ FADD  I+++    +++   + I V+    W +   + + PTKSA  
Sbjct: 899  LLIDLAPTINISCFADDVKIFHT--DPTIIQNSIDIIVS----WSKLNELPLAPTKSAL- 951

Query: 360  LFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIK 539
                         + L +R  N S     ++ G PI   S V+ LG+  D  + F  HI 
Sbjct: 952  -------------LALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDCKLKFEHHIV 994

Query: 540  TVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA 683
             V   +   + R   +L + S  S +    LYKT + P+M Y S V+A
Sbjct: 995  KV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 44/171 (25%), Positives = 80/171 (46%)
 Frame = +3

Query: 24  GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPE 203
           G+  ++ L + ++L  R  R   +   S+   L  GVPQGS +SP LF+ Y+ D+P   +
Sbjct: 497 GIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQD 556

Query: 204 THLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPP 383
           T L  +ADD +I    +K+     ++Q+ +  + ++ ++  + I+  KS   +F      
Sbjct: 557 TMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVF------ 610

Query: 384 NITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 536
              S  P   +         I     PIP ++  K LG+TL+     + H+
Sbjct: 611 ---SCDPKEHK-----TKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHV 653


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 67/256 (26%), Positives = 111/256 (43%), Gaps = 29/256 (11%)
 Frame = +3

Query: 3   IYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGSALSPLLFSLYI 179
           + KL++ G+         DFLS+R+F  +V          +++GVP+GS   P LF ++I
Sbjct: 13  LQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLFLIFI 72

Query: 180 NDIPRS--PETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSA 353
           N +  S  P    + FADD  +Y     +      +Q  +  +  W    ++ +   K A
Sbjct: 73  NSLLLSVPPSISCSAFADDLKVYSHSPPL------IQTTIDLITTWSENNKLPLAVHK-A 125

Query: 354 AVLFKRGRPPN-------ITSSIPLRSRRANTSAVS----------------PITLF--- 455
           A+L K G   N       + +S+  R   A+ + VS                P T++   
Sbjct: 126 ALLNKLGFSSNCVLLLAPLINSLVCRLLAASRTGVSTVAHSKTCLLHLGKKNPKTVYKIN 185

Query: 456 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 635
             PI   +  + LG+  D  +TF+PHIK +    +  L R   +L S   L       L+
Sbjct: 186 NLPISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLF 242

Query: 636 KTCIRPVMTYASVVFA 683
           KT I P++ Y S V++
Sbjct: 243 KTYILPLIEYGSAVYS 258


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +3

Query: 450 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 629
           L G PI   +  + LG  +   + F  H K   + A F L  ++    + +K  +   + 
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192

Query: 630 LYKTCIRPVMTYASVV 677
           LYKT IRP + Y +VV
Sbjct: 193 LYKTFIRPRLEYGTVV 208


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 378 PPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVK 488
           PP   S   L    ANT+  + +T  G+P+  V K+K
Sbjct: 878 PPPTPSPATLTPTSANTTTAASVTPSGKPVSKVEKLK 914


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,636
Number of Sequences: 27780
Number of extensions: 389191
Number of successful extensions: 1055
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)