Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0025
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...   149   7e-35
UniRef50_Q9A4C3 Cluster: L-aspartate oxidase; n=10; Alphaproteob...    33   4.5  
UniRef50_Q2JUS7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  
UniRef50_A6UGR6 Cluster: Alpha amylase catalytic region; n=2; Si...    33   7.8  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score =  149 bits (360), Expect = 7e-35
 Identities = 70/82 (85%), Positives = 74/82 (90%)
 Frame = +2

Query: 398  EELFEMIPSSRF*YRTARHRSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPE 577
            EELFEMIP+SRF +RTARHRSRVHPYYLEPLRSST+RFQR FLP TIRLWNELP  VFPE
Sbjct: 893  EELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPE 952

Query: 578  RYDMSFFKRDLCRVLNGRQWLG 643
            RYDMSFFKR L RVL+GRQ LG
Sbjct: 953  RYDMSFFKRGLWRVLSGRQRLG 974


>UniRef50_Q9A4C3 Cluster: L-aspartate oxidase; n=10;
           Alphaproteobacteria|Rep: L-aspartate oxidase -
           Caulobacter crescentus (Caulobacter vibrioides)
          Length = 511

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +1

Query: 445 RPPPE*SSSILSRATAVIYNAFPKVFFTRYHPALE*APPTGVSRAL 582
           R P   ++  L    A++ NA  K F   YHPA E AP   V+RAL
Sbjct: 244 RDPAPLATEALRGEGAILRNADGKAFMADYHPAKELAPRDVVARAL 289


>UniRef50_Q2JUS7 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. JA-3-3Ab|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain JA-3-3Ab)
           (Cyanobacteria bacteriumYellowstone A-Prime)
          Length = 215

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 446 ARHRSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPER 580
           A+ R R HP +L  L      +   F P  + +W + PPPV PE+
Sbjct: 152 AKIRLRFHPSFLNFLEQHPPCYAEGFGPQLV-IWRDYPPPVTPEK 195


>UniRef50_A6UGR6 Cluster: Alpha amylase catalytic region; n=2;
           Sinorhizobium|Rep: Alpha amylase catalytic region -
           Sinorhizobium medicae WSM419
          Length = 544

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 446 ARHRSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPPVFPE 577
           A H S  HP++    R +  RF+ Y+      +W+  PPPV P+
Sbjct: 102 ANHTSSEHPWFQAARRDARCRFRDYY------VWSASPPPVAPD 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,782,234
Number of Sequences: 1657284
Number of extensions: 12875478
Number of successful extensions: 26922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26914
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)