Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0025
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    26   0.31 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.8  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.0  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 488 LRSSTMRFQRYFLPGTIRLWNEL 556
           L    +RF +Y   GT++LW++L
Sbjct: 79  LEQFIVRFMKYHFFGTLKLWSQL 101


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 97   LKVLILLTDSVVQ*LAPPTVPPRVV 171
            +K L++ TDS++    PP  P  +V
Sbjct: 1207 VKALVMSTDSILASWKPPVEPNGIV 1231


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 558 PHRCFPSAMTCPSSNETCVE 617
           PHRC  +  +CP+ +    E
Sbjct: 346 PHRCHGNLQSCPTRSHAVWE 365


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 219 QTCSSHECLPDEGNR 175
           Q C   +C+P +GN+
Sbjct: 81  QDCYREDCIPGDGNK 95


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 558 PHRCFPSAMTCPS 596
           PH+C  +A  CPS
Sbjct: 338 PHKCNGNAHNCPS 350


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 558 PHRCFPSAMTCPS 596
           PH+C  +A  CPS
Sbjct: 345 PHKCNGNAHNCPS 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,303
Number of Sequences: 336
Number of extensions: 3311
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)