Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0025
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    30   0.33 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   7.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 413 MIPSSRF*-YRTARHRSRVHPYYLEPLRSSTMRF----QRYFLPGTIRLWNELPPPVFPE 577
           ++ SSR   Y  ++ RS  HP   + + SS  RF    Q    P + R  N+LP PV P 
Sbjct: 413 LLTSSRIPSYNGSKVRSTSHPSRQQYIGSSNSRFNTRHQTISTPVSGRASNDLPSPVVPT 472

Query: 578 RYDMS 592
           R + S
Sbjct: 473 RSNSS 477


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 476 YLEPLRSSTMRFQRYFLPGTIRLWNELP 559
           Y E L  + +RFQR+ L G I  + E+P
Sbjct: 77  YPETLARTQIRFQRHGLEGKIMGYKEVP 104


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 215 PAHHTNVYPMRGIEPTTL 162
           P HH+++ P  G++P+T+
Sbjct: 184 PPHHSSLPPHMGVDPSTM 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,061
Number of Sequences: 5004
Number of extensions: 52679
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)