Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0025
         (644 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36529-1|AAA53571.1|  657|Homo sapiens protein p84 protein.            32   1.5  
BC010381-1|AAH10381.1|  657|Homo sapiens THO complex 1 protein.        32   2.0  

>L36529-1|AAA53571.1|  657|Homo sapiens protein p84 protein.
          Length = 657

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 398 EELFEMIPSSRF*YRTARHRSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPP 565
           E  ++ + +S + +R  +  +R  P++ +P        Q Y     I+L  ELPPP
Sbjct: 481 ENEYKAMNNSNYGWRALKLLARRSPHFFQPTNQQFKSLQEYLENMVIKLAKELPPP 536


>BC010381-1|AAH10381.1|  657|Homo sapiens THO complex 1 protein.
          Length = 657

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 398 EELFEMIPSSRF*YRTARHRSRVHPYYLEPLRSSTMRFQRYFLPGTIRLWNELPPP 565
           E  ++ + +S + +R  R  +R  P++ +P          Y     I+L  ELPPP
Sbjct: 481 ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPP 536


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,157,281
Number of Sequences: 237096
Number of extensions: 2018304
Number of successful extensions: 3715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3715
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)