Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0025
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16720.1 68418.m01958 expressed protein contains Pfam profile...    27   8.1  
At5g06240.1 68418.m00697 expressed protein                             27   8.1  
At4g18425.1 68417.m02734 expressed protein contains Pfam profile...    27   8.1  

>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 675

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 317 ITLF*SYFGAE*PCVICSKLY*ILL*HEELFEMIPSSRF*YR 442
           I  F S+FG +  C++C KL       + +FE  P +RF Y+
Sbjct: 44  IVKFASFFGLKQVCLLCPKL-------DRIFERKPENRFTYK 78


>At5g06240.1 68418.m00697 expressed protein 
          Length = 162

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 440 DIKNEMMESSRTTP-HVTIKFNITWNKLRTVIRPQSKIRIVLWV 312
           D+K  ++ SS   P HV  +  +TW++   V++  S++    WV
Sbjct: 17  DLKEIVLPSSLPDPPHVVKRRKLTWHERFLVLKEASRLYAASWV 60


>At4g18425.1 68417.m02734 expressed protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 213

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 494 TAVALDSMDELYSGGGRCDIKNEMMESS 411
           T +A   +  ++S GG+CD+ +++M S+
Sbjct: 59  TVLAFQLLSPIFSNGGQCDLVSKIMTST 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,779
Number of Sequences: 28952
Number of extensions: 291255
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)