Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0024
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419...    28   3.1  
02_05_0507 - 29617998-29618099,29618299-29618386,29618470-296185...    28   4.1  
01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996     28   4.1  
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279...    27   9.5  

>02_01_0570 -
           4195409-4195443,4196245-4196333,4196539-4196630,
           4196726-4196833,4196984-4197118,4197211-4197256,
           4197358-4197458,4198285-4198422,4198503-4198601,
           4198740-4198856,4199195-4199356,4199734-4199793,
           4200371-4200538,4200608-4200718,4201401-4201499,
           4201579-4201644,4202407-4202490,4202563-4202605,
           4202684-4202739,4202817-4202925,4203442-4203524,
           4203842-4203925,4204311-4204382,4204462-4204539,
           4204633-4204716,4204806-4204876,4205943-4206012,
           4206495-4206626,4207168-4207284,4208185-4208367
          Length = 963

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 228 QDTLSHVIQIKVRYIFTRTTLPVCGVLNRLNGISRYK 118
           QDTL H  ++K  +IF   T  +C V N  N    Y+
Sbjct: 834 QDTLDHANKVKNTFIF--NTFVLCQVFNEFNSRKPYE 868


>02_05_0507 -
           29617998-29618099,29618299-29618386,29618470-29618567,
           29618680-29618766,29618887-29619042,29619228-29619334,
           29619621-29619706,29619796-29619870,29619987-29620204
          Length = 338

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 238 TGTPL-PLYLARSSNTFQFQRSNRRYTIQLKLRSHVSRWVTALCWGKCGLL*PLKTKWPV 414
           TG+PL P++    S  +++ R   +  +++   +   ++   + WGK G   P  T   V
Sbjct: 231 TGSPLVPVFAFGQSYVYKWWRPGGKLIVKI---ARAIKFTPIMFWGKFGTPIPFATPMHV 287

Query: 415 IEGYHSPVKK 444
           + G    VKK
Sbjct: 288 VVGRPIEVKK 297


>01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996
          Length = 507

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 369 PT*CRHPPRNMRSKFQLYSITAVRPLKLECIAASRQ 262
           PT  R  PR +   FQ YS+T V  L L  I  +R+
Sbjct: 19  PTPRRDTPRKLSHYFQGYSVTVVTSLTLRDILHNRE 54


>02_05_0243 -
           27124559-27124864,27126922-27126990,27127741-27127926,
           27128572-27129093
          Length = 360

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 248 HYHYIWREAAIHSSFKGRTAVILYS 322
           HYHY    AA+H S +  T  +L+S
Sbjct: 73  HYHYHHSGAAVHHSRESSTGRLLFS 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,049,367
Number of Sequences: 37544
Number of extensions: 271937
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)