Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0024
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13)                    29   1.8  
SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082)                  29   1.8  
SB_18090| Best HMM Match : RVT_1 (HMM E-Value=0.59)                    29   1.8  
SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)                 29   1.8  
SB_15890| Best HMM Match : ArsC (HMM E-Value=0.94)                     29   1.8  
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   5.6  
SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)              27   9.7  
SB_22362| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_59170| Best HMM Match : RVT_1 (HMM E-Value=0.13)
          Length = 679

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 180 TRTTLPVCGVLNRLNGISRYKY 115
           T + +P+CG  NRLN    Y+Y
Sbjct: 654 TASVVPICGRTNRLNNFCTYRY 675


>SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
          Length = 559

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 180 TRTTLPVCGVLNRLNGISRYKY 115
           T + +P+CG  NRLN    Y+Y
Sbjct: 534 TASVVPICGRTNRLNNFCTYRY 555


>SB_18090| Best HMM Match : RVT_1 (HMM E-Value=0.59)
          Length = 427

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 180 TRTTLPVCGVLNRLNGISRYKY 115
           T + +P+CG  NRLN    Y+Y
Sbjct: 402 TASVVPICGRTNRLNNFCTYRY 423


>SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)
          Length = 692

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 180 TRTTLPVCGVLNRLNGISRYKY 115
           T + +P+CG  NRLN    Y+Y
Sbjct: 667 TASVVPICGRTNRLNNFCTYRY 688


>SB_15890| Best HMM Match : ArsC (HMM E-Value=0.94)
          Length = 310

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 180 TRTTLPVCGVLNRLNGISRYKY 115
           T + +P+CG  NRLN    Y+Y
Sbjct: 285 TASVVPICGRTNRLNNFCTYRY 306


>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 434

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 131 IPLSRFKTPQTGK---VVLVNIYLTLI*ITCDRVSCQPARVHHYH 256
           IP +   TP  GK    VL+ I L L+       +C P R+HH+H
Sbjct: 299 IPATSEATPLIGKYFAAVLIEISLCLL------ATCVPLRLHHHH 337


>SB_15650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 74  VNEVIISQRIRRPMYLYRDIPLSRFKTPQTGKVVLVNIY-LTLI*ITCDRVSCQPAR 241
           V E  IS+R++       D  LS F  PQT ++V VN+   ++       +SCQP R
Sbjct: 38  VCEAFISKRLKSGDCT--DNFLSSFSNPQTSRIVRVNLKGASITDRGLQLISCQPIR 92


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 210  HVIGCLVSLHGYTTTTISGAKQQYIPVSKVEPPLYYTVET*ISCFEV 350
            HVI   V L  +T  +I+ ++++Y+PV+     LY+ V T +S  +V
Sbjct: 3023 HVIQQRVDLAEHTEESINASREKYLPVAARGAILYF-VLTDLSSLDV 3068


>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
          Length = 604

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 191 LTLI*ITCDRVSCQPARV--HHYHYIW 265
           LTL+  TCD + CQ   +  H YH I+
Sbjct: 164 LTLLCDTCDELICQDCAITTHQYHKIY 190


>SB_22362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 247 PLPLYLARSSNTFQFQRSNRRYTIQLKLRSHVSRWVTALCWG 372
           P+PL+         +Q  +  Y+  L + S++  W+ ALC+G
Sbjct: 162 PVPLFAQSEHTVAHWQPDDPGYS--LHVLSNMGEWLAALCFG 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,573
Number of Sequences: 59808
Number of extensions: 322531
Number of successful extensions: 627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)