Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0024
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    29   2.1  
AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm rec...    27   6.5  
AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm rece...    27   6.5  
U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.        27   8.6  
AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine re...    27   8.6  

>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 76  KRGHHIPKDKAADVLIPRY----SIKSVQNPTDR*GCSSEYIPDLDL 204
           KR    P+ K  + L+ RY    ++ S  N T + GC S  +PD+DL
Sbjct: 338 KRKRRTPERKVHERLLSRYEGLLAVYSHCNCTKQHGCVSTSVPDMDL 384


>AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform a protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 147 NRLNGISRYKYIGRLILWDMMTSFTY 70
           N L+G      +G  ILW MMTS ++
Sbjct: 174 NGLHGFEPLPIVGMCILWSMMTSSSF 199


>AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform b protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 147 NRLNGISRYKYIGRLILWDMMTSFTY 70
           N L+G      +G  ILW MMTS ++
Sbjct: 193 NGLHGFEPLPIVGMCILWSMMTSSSF 218


>U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 28  FNYYFYCYTLTRSWICKRGHHIPK 99
           F + +  Y +T  WI +RG H PK
Sbjct: 52  FGHTYADYMMTCDWIAERGWHHPK 75


>AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein33 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -2

Query: 250 VVYP----CRLTRHPITCNSDQGQVYIH*NNLTCLW 155
           ++YP    C LT+ P  C   +  VY+H   +TC W
Sbjct: 28  IIYPFAHFCVLTKSPKKCGYLKWVVYLHCFWITCEW 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,742
Number of Sequences: 27780
Number of extensions: 233782
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)