Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0022
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-8|AAG24222.1|  327|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    28   5.5  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF040661-8|AAG24222.1|  327|Caenorhabditis elegans Hypothetical
           protein W10G11.16 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 200 GFELMQGTIVFSTNAFCTLYGVWLPVVLMSG-IGVS---LLRVSTE 75
           GF + Q  I  S     +  GVWLP   M G IGV+   LL +STE
Sbjct: 166 GFHIAQTYIPTSLALMFSWVGVWLPEEFMEGRIGVAITVLLTLSTE 211


>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.31 protein.
          Length = 1219

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   STANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIP 111
           +T  TTT  VPP  T T    +   +V T  R T +P
Sbjct: 339 TTTTTTTTTVPPTTTRTTTTTTPRPTVPTVPRTTTVP 375


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 1   STANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHT 138
           +T  TTT   P   T T    +T+ +  T  R TP+ ++  T   T
Sbjct: 106 TTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTRSTPLTEVFRTSTTT 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,705,465
Number of Sequences: 27780
Number of extensions: 212976
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)