Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0022
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72650.2 68414.m08402 myb family transcription factor contain... 32 0.31
At1g72650.1 68414.m08401 myb family transcription factor contain... 32 0.31
At3g60850.1 68416.m06807 expressed protein 31 0.54
At4g10170.2 68417.m01665 synaptobrevin-related family protein si... 30 1.3
At4g10170.1 68417.m01664 synaptobrevin-related family protein si... 30 1.3
At5g64540.1 68418.m08111 hypothetical protein 29 2.9
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ... 29 2.9
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ... 29 2.9
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 28 6.7
At5g18980.1 68418.m02255 expressed protein 27 8.9
At5g11460.1 68418.m01338 senescence-associated protein-related s... 27 8.9
At2g19190.1 68415.m02239 light-responsive receptor protein kinas... 27 8.9
>At1g72650.2 68414.m08402 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 630
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 40 VTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPCINSKPYQYTEL 219
V GT+ + + R+TP N GN YK+ + + ++VP + + + +
Sbjct: 4 VVGTVEDRRDMFEGNAQTRITPFSSTNQIGNPVAYKLVRVSGDGSLVPATDEEILEVNDT 63
Query: 220 LMTLP 234
M +P
Sbjct: 64 DMHIP 68
>At1g72650.1 68414.m08401 myb family transcription factor contains
Pfam PF00249: Myb-like DNA-binding domain
Length = 624
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 40 VTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPCINSKPYQYTEL 219
V GT+ + + R+TP N GN YK+ + + ++VP + + + +
Sbjct: 4 VVGTVEDRRDMFEGNAQTRITPFSSTNQIGNPVAYKLVRVSGDGSLVPATDEEILEVNDT 63
Query: 220 LMTLP 234
M +P
Sbjct: 64 DMHIP 68
>At3g60850.1 68416.m06807 expressed protein
Length = 648
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +1
Query: 55 NGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPCINSKPYQYTELLMTLP 234
N S S S + R+R ++ P ++Q+ ++ +V CI K +Y + +
Sbjct: 252 NADSGSASRNKRRRFEYTESLDVPAKEVPDRLQQLAAKHKVVLCIRQKYIRYKPFMAEVK 311
Query: 235 DLASH 249
D A H
Sbjct: 312 DYACH 316
>At4g10170.2 68417.m01665 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}; vesicle-associated membrane
protein 7B, Arabidopsis thaliana, AF025333
Length = 254
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 254 KKWLARSGRVISSSVYW*GFELMQGTIVFSTNAFCTLYGVWLPV 123
K+ ++ SGR ++ S W L+Q + TL+G+WL +
Sbjct: 202 KECVSSSGRSVTQSFEWKWRRLVQIVLAIDAAICLTLFGIWLAI 245
>At4g10170.1 68417.m01664 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}; vesicle-associated membrane
protein 7B, Arabidopsis thaliana, AF025333
Length = 254
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 254 KKWLARSGRVISSSVYW*GFELMQGTIVFSTNAFCTLYGVWLPV 123
K+ ++ SGR ++ S W L+Q + TL+G+WL +
Sbjct: 202 KECVSSSGRSVTQSFEWKWRRLVQIVLAIDAAICLTLFGIWLAI 245
>At5g64540.1 68418.m08111 hypothetical protein
Length = 440
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 4 TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTT 126
T +TT+ V + T + HS+S SVD + IPD++++
Sbjct: 305 TPISTTLTVDLNTSTTTSTHSSSPSVDRLDTVAQIPDLSSS 345
>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 ASHFFPRVSLTTCRAMLDALGLILYRPNSTQLQVL-RNSGKCKSAAAGEN 387
ASH+ VS+T+ AM L PN L +S C+S A+G N
Sbjct: 194 ASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLN 243
>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 241 ASHFFPRVSLTTCRAMLDALGLILYRPNSTQLQVL-RNSGKCKSAAAGEN 387
ASH+ VS+T+ AM L PN L +S C+S A+G N
Sbjct: 194 ASHYNRHVSITSAEAMQKVARTDLQHPNGANLLTFGSDSVLCESMASGLN 243
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 127 GNHTPYKVQKALVENTMVPCINSKPYQYTELLMTLPD 237
G ++PY Q+ L + +NS YQY +L T+P+
Sbjct: 175 GLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPN 211
>At5g18980.1 68418.m02255 expressed protein
Length = 835
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 349 NSGKCKSAAAGENGMALVQVRDVMHHMLQFKYMLRSGLG 465
N+GKC E + VRDV+ H ++ + + G+G
Sbjct: 539 NTGKCLRREISEIVFTVSNVRDVLKHGARYPKLQKLGIG 577
>At5g11460.1 68418.m01338 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 344
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 9 QHNNYERASASDRHDEWPLNLSLRGH 86
QH+NY+ +ASD + P+ ++R H
Sbjct: 3 QHSNYQMTTASDYYSTKPVLSAIRSH 28
>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
senescence-responsive receptor-like serine/threonine
kinase, putative (SIRK) similar to light repressible
receptor protein kinase [Arabidopsis thaliana]
gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
Protein kinase domain and PF00560: Leucine Rich Repeat
Length = 876
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 297 RVEHGAAGGERDAREEVAGEVRQGHQQLRVLVGLRIDARH 178
+V HG GE+ A + ++ E QG+++ R V L + H
Sbjct: 587 KVYHGVINGEQVAVKVLSEESAQGYKEFRAEVDLLMRVHH 626
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,584
Number of Sequences: 28952
Number of extensions: 199748
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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