Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0017
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    36   0.035
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    36   0.035
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      36   0.035
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    36   0.035
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    36   0.035
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    27   9.2  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    27   9.2  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    27   9.2  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    27   9.2  

>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 549 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TENHLLLL 671
           WHS+   +  CL  + TF+ FC  + +LHY+   T NHL+ L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 549 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TENHLLLL 671
           WHS+   +  CL  + TF+ FC  + +LHY+   T NHL+ L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 549 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TENHLLLL 671
           WHS+   +  CL  + TF+ FC  + +LHY+   T NHL+ L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 549 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TENHLLLL 671
           WHS+   +  CL  + TF+ FC  + +LHY+   T NHL+ L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 549 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYLHP*TENHLLLL 671
           WHS+   +  CL  + TF+ FC  + +LHY+   T NHL+ L
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYIDNETFNHLIYL 332


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 476 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 595
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>Z78019-4|CAD54176.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.8 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 9   YMYKQTIISFSF*NEKSFGKFNYMSTSSSLIQNDCLTKYLDDA 137
           Y YK  + S  F N+K+F       +S+  IQN C+    D A
Sbjct: 50  YCYKSYLESRDFNNDKTFVSGRACGSSNLCIQNGCVGTNTDKA 92


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 558 SWAMQLCLWHYSTFSLFCPWVHLLHY 635
           SWA+ +C+   STF+L C    +LHY
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHY 104


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 352 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 391


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 329 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 368


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 491 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 530


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 167 RCIFKLRRILSIIKVLCKTVILYQTAAGRHVIEFAERFLI 48
           RC    + I + ++ +CK ++L++  +  H IE  E+ ++
Sbjct: 440 RCDTSAKTIANTLRDICKRLMLHRRPSSLHAIESGEKRIV 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,726
Number of Sequences: 27780
Number of extensions: 258369
Number of successful extensions: 778
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)