Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0017
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28110.1 68416.m03508 hypothetical protein                          30   1.2  
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    28   4.9  
At3g18640.1 68416.m02368 zinc finger protein-related contains si...    28   6.5  
At3g14000.2 68416.m01768 expressed protein                             28   6.5  
At3g14000.1 68416.m01767 expressed protein                             28   6.5  
At2g29670.1 68415.m03606 expressed protein                             27   8.6  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    27   8.6  

>At3g28110.1 68416.m03508 hypothetical protein
          Length = 354

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = -1

Query: 669 EEGDDSQFKDEDNEEGE 619
           +EGD+++++DEDNEE E
Sbjct: 143 DEGDENEYEDEDNEEDE 159


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 671 KKKEMILSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRN 543
           K K + L  + K++KKV    KK K +   K  LHR  R+ ++
Sbjct: 9   KSKRVTLKQKHKVLKKVKEHHKK-KAKDAKKLGLHRKPRVEKD 50


>At3g18640.1 68416.m02368 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 676

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 672 EEEGDDSQFKDEDNEEGEPKGKKA 601
           +E+GDD    +E+ +E +PKG +A
Sbjct: 574 DEDGDDDGSDEENKKEKDPKGMRA 597


>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 452 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 580
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 452 VAPSPAQFRYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAALP 580
           VA +  +FRY Y   G G+++PK + +     L  FL     P
Sbjct: 81  VASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTP 123


>At2g29670.1 68415.m03606 expressed protein
          Length = 536

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 671 KKKEMILSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPR--RMPRNEQTAWRPILG*SYRR 498
           K++  +   R    + V  R  +      P  KLHRP+   + ++  ++ RPI   S+RR
Sbjct: 40  KRRSTVHDGRFLSCRFVTQRLNRSALFGTPSTKLHRPKSCELWKSSSSSSRPIKTQSFRR 99

Query: 497 HFRYN 483
            +  N
Sbjct: 100 VYSAN 104


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = +3

Query: 489 PKMATVRLAQNGSPGGLFISWHSS-----WAMQLCLWHYSTFSLFCPWVH 623
           P++ + R  + G  GG    W  S     W + + LW Y  F +   W H
Sbjct: 28  PRVYSGRTPRRGHGGGGAFQWFRSSRLVYWLLLITLWTYLGFYVQSRWAH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,984
Number of Sequences: 28952
Number of extensions: 232026
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)