Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0015
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0827 - 7662180-7662192,7662451-7662764 32 0.37
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 31 0.84
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 0.84
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 29 3.4
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 29 3.4
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 29 3.4
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294... 29 4.5
05_03_0040 - 7646525-7647775 29 4.5
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 29 4.5
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 29 4.5
09_04_0179 - 15366119-15366916 28 6.0
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094... 28 6.0
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 28 6.0
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 28 7.9
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 7.9
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 28 7.9
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 350 QLWWVSNPRTVSKLCPTIRESIPSAEPQ-LPRSGSKSVSRATEQFPEPKSGPVARPEP 520
Q WW+ P+T + P+ R P+A Q LPR S P PK+G A P P
Sbjct: 18 QKWWICTPKTQQTVVPSARG--PTATDQVLPRQRSD-----RSACPRPKNGGSACPRP 68
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 365 SNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARP 514
S P T S+ P + S PS++P P + V + P P+ P +P
Sbjct: 32 SQPTTTSRSIPVVLPSAPSSKPPPPTQTAPPVPVVISEPPPPQPQPEPQP 81
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 416 PSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 535
P +P+ P+ G K + + P+PK GP P+P W P
Sbjct: 194 PKPKPKPPKPGPKPKPKPPKPGPKPKPGP---PQPWWPIP 230
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 601 INYTCKLGSMDTILGKTTKLANLTG 675
I YTCK+ +D ILG T K+ + G
Sbjct: 352 ILYTCKVSYIDAILGTTVKVPTVDG 376
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 601 INYTCKLGSMDTILGKTTKLANLTG 675
I YTCK+ +D ILG T K+ + G
Sbjct: 352 ILYTCKVSYIDAILGTTVKVPTVDG 376
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 601 INYTCKLGSMDTILGKTTKLANLTG 675
I YTCK+ +D ILG T K+ + G
Sbjct: 352 ILYTCKVSYIDAILGTTVKVPTVDG 376
>05_05_0192 -
23128460-23128502,23129130-23129216,23129299-23129443,
23130812-23130872,23131046-23131164,23131320-23131374
Length = 169
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 137 VFVALDHVNDPTDYFFRNVENLSWF 63
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>05_03_0040 - 7646525-7647775
Length = 416
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 374 RTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEP 520
R +SK E +P EP+ + E PEP+ PV PEP
Sbjct: 40 RFMSKQGRVTYEKLPEPEPKPKPKPHPKPTPKPEPKPEPEPKPVPEPEP 88
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 137 VFVALDHVNDPTDYFFRNVENLSWF 63
VF DH D+FF++ EN+S+F
Sbjct: 52 VFSTKDHRQVKNDFFFKSAENISFF 76
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 287 LSCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKL 391
LSC +H P + S S+ G +W V + +SKL
Sbjct: 750 LSCSSHSEEPKVNGSERSQAGSVWDVFRRQDISKL 784
>09_04_0179 - 15366119-15366916
Length = 265
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 582 IGLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGSCGSALG 415
IG+ + I +G G +GSG +G GSG+ S + R S GS++G
Sbjct: 40 IGIGTGISIGIGGG-AGGSGSGSGSGSGSFSGSGSSSGSGSASGSGSRSSAGSSVG 94
>08_02_0270 +
15108178-15108587,15108678-15108774,15109445-15109492,
15109583-15109806,15111367-15111463,15111556-15111651,
15112297-15112544,15112632-15112715,15112787-15113236,
15114880-15115024,15115116-15115217,15115677-15115769,
15117308-15117349,15119085-15119113,15119210-15119251,
15119922-15119997,15120764-15120835,15121208-15121326,
15121428-15121491,15121576-15123009
Length = 1323
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 166 RKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLIILLCPLERTQLQLVQQ 336
R+++ S GL+PP P + N+ ++ LIIL+ P E +L QQ
Sbjct: 775 RQKELPHGSKLIMGLNPPFGPKAMLANKFIDKALTFKPKLIILIVPKEAERLDRKQQ 831
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 416 PSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 535
P A + ++ S+S S ATE P S PVA P + P
Sbjct: 413 PLAPAEATKNESESESAATESAPAVNSAPVAEAAPEAAPP 452
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 365 SNPRTVSKLCPTIRESIPSAEPQLP-RSGSKSVSRATEQFPEPKSGPVARPEPVWSEP 535
S+PRTV + + R S P P+ P + S++ S +P G R V P
Sbjct: 558 SSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKPSQGKNHRDNEVSKSP 615
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 398 TIRESIPSAEPQLPRSGSKSVSRATEQFPEP--KSGPVARPEP 520
++ ES P P +P K +S Q P P K+ PV PEP
Sbjct: 547 SLSESTPMQPPVMPPPIPKLLSPPAPQAPMPPLKASPVPPPEP 589
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 184 EISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLI--ILLCPLERTQLQLVQQFQTRAAM 357
EI+ST PP P V+ RS + K+ +L+ I LCP+ +++ + +M
Sbjct: 275 EINSTAPSSPPPPPP--VTETRSGRKKVLTVALLVPLIALCPVVIFCFAWIRRLRNHKSM 332
Query: 358 VGLKPKDS 381
L+ KD+
Sbjct: 333 --LRKKDT 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,650,551
Number of Sequences: 37544
Number of extensions: 337524
Number of successful extensions: 1218
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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