Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0015
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 34 0.11
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 33 0.14
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 2.3
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 2.3
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 2.3
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.4
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.1
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 7.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 28 7.1
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
F20C5.2b protein.
Length = 1130
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 130 TKTSQRKPIKLNR--KRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKIS 270
T ++RK I + R R K+ + LHPPT P+++S++ SS + ++
Sbjct: 1050 TPRTRRKLISVRRLKDRNRKKFKCSMKRLHPPTSPSKISKSASSSSDLT 1098
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 401 IRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRA 556
+RE P AE P S SK V ++ +P P+A+PE S C RA
Sbjct: 555 VREISPVAENLEPTSESKRVKSKKQKKQKPSENPIAKPEEKQSNACPKCFRA 606
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 579 GLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGN 478
G ++ + P G+ G GSG A G FGSGN
Sbjct: 59 GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 579 GLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGN 478
G ++ + P G+ G GSG A G FGSGN
Sbjct: 59 GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 579 GLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGN 478
G ++ + P G+ G GSG A G FGSGN
Sbjct: 59 GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 407 ESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT 538
+S+ +P+ P+ SK+ ++ + P+PK P P+P +EP+
Sbjct: 14 DSLGGPKPKDPKLASKAPAKKPSETPKPKEVPKELPKP--AEPS 55
>Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical
protein C33D9.3b protein.
Length = 351
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 386 KLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSG-PVARPEPVWSEPT*LCP 550
KLC + ++ + + +P+S S ++T F P P+ PEP + + + P
Sbjct: 267 KLCKSRFVNVSTTDTPIPKSSKSSPGKSTPTFALPSPPVPLKSPEPQYCHQSIVAP 322
>Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical
protein C33D9.3a protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 386 KLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSG-PVARPEPVWSEPT*LCP 550
KLC + ++ + + +P+S S ++T F P P+ PEP + + + P
Sbjct: 270 KLCKSRFVNVSTTDTPIPKSSKSSPGKSTPTFALPSPPVPLKSPEPQYCHQSIVAP 325
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 383 SKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGP 502
S P+ PS++ P +GS + S+ + Q P P P
Sbjct: 380 SSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP 419
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 383 SKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGP 502
S P+ PS++ P +GS + S+ + Q P P P
Sbjct: 587 SSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP 626
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 383 SKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGP 502
S P+ PS++ P +GS + S+ + Q P P P
Sbjct: 587 SSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP 626
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 122 DHVNDPTDYFFRNVENLSWFQQRCRCVD*YD*KYDKRGL 6
DH P + +V +L W+ Q RC D + +DK G+
Sbjct: 139 DHWTTPEKQAYNDVGDLWWWLQNERCRDQFAISHDKLGV 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,613
Number of Sequences: 27780
Number of extensions: 276233
Number of successful extensions: 1062
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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