Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    50   2e-05
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.086
UniRef50_Q1JXT2 Cluster: Diguanylate cyclase/phosphodiesterase w...    31   5.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 50.0 bits (114), Expect = 2e-05
 Identities = 29/47 (61%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = +3

Query: 195 PLIFSPDLLSESRFRSGGRFCETLVLLG--LANSLRLSP*VHLPVRP 329
           P+ F       SRFRS GRFCE L+LLG  LANSLRLSP   LP RP
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSP-YELPNRP 119


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.086
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +3

Query: 192 CPLIFSPDLLSESRFRSGGRFCETLVLLGLANSLRLSP 305
           CPL FSPDLLS SRFR+G  + E L L  +A ++ +SP
Sbjct: 395 CPLSFSPDLLSGSRFRTGAEY-EMLGLGTIAGNI-VSP 430


>UniRef50_Q1JXT2 Cluster: Diguanylate cyclase/phosphodiesterase with
           PAS/PAC sensor(S) precursor; n=1; Desulfuromonas
           acetoxidans DSM 684|Rep: Diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(S)
           precursor - Desulfuromonas acetoxidans DSM 684
          Length = 868

 Score = 31.5 bits (68), Expect = 5.7
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 291 ENLLALARPVSRRIYHRIGISTH*EDP---VRKSVGIN 187
           EN+  LA  +SRRI HR+G   + ED    V  SVGI+
Sbjct: 528 ENIAELASSISRRILHRLGTPLNIEDQELIVTTSVGIS 565


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,365,981
Number of Sequences: 1657284
Number of extensions: 6313102
Number of successful extensions: 12529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12527
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)