Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      30   0.14 
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    24   7.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    24   9.4  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    24   9.4  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.9 bits (64), Expect = 0.14
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 177 FDFFFLEHCFAFYIFLILSK*KRNSIPLYKGCFIHQNRLKDYFA 46
           F FFF  HC  F+I + +     N +P +  CF     L  +F+
Sbjct: 80  FFFFFFSHCRRFHIAIFIHPYDSNVVPFF--CFFFYFSLFSFFS 121


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 277 PSKTSVSQNLPPDRNLDSLRRSGEKISG 194
           P+K  + QN+P + N D L +  E  SG
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSG 199


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 15  PDSYHHHDFVLRSSLSICFDG---*NNLYIMESNFFSILI-KLRICKKRNSVPK 164
           PD +   D +L    S+C DG      L ++  N   IL+ KLR+  + +   K
Sbjct: 766 PDGFSLKDVILEKDSSLCMDGKLLQRLLTMLSFNEIKILLSKLRVLARMSPFDK 819


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 261 SRRIYHRIGISTH*EDPVRKSVGINC 184
           S R +H I    H E P+R ++  NC
Sbjct: 574 SVRFFHAIQSHFHLEGPIRYNMNSNC 599


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 33  HDFVLRSSLSICFDG*NNLYIMESNFFS 116
           H F++   + +CFD   +  I  ++F S
Sbjct: 355 HSFIIYIQMQLCFDDLESYLIRRNHFLS 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,706
Number of Sequences: 5004
Number of extensions: 28455
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)