Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075584-1|AAL68388.2|  246|Drosophila melanogaster SD08771p pro...    27   6.3  
AE014298-2094|AAF48417.1|  235|Drosophila melanogaster CG9053-PB...    27   6.3  
AE014298-2093|AAN09654.1|  242|Drosophila melanogaster CG9053-PA...    27   6.3  

>AY075584-1|AAL68388.2|  246|Drosophila melanogaster SD08771p
           protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +3

Query: 6   F*TPDSYHHHDFVLRSSLSICFDG*NNLYIMESNFFSILIK 128
           F  P++ H H+         CFD   +++  ++ FF ++++
Sbjct: 92  FKKPENVHRHEVAKEGDYRFCFDNSFSMFNRKTVFFELIVE 132


>AE014298-2094|AAF48417.1|  235|Drosophila melanogaster CG9053-PB,
           isoform B protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +3

Query: 6   F*TPDSYHHHDFVLRSSLSICFDG*NNLYIMESNFFSILIK 128
           F  P++ H H+         CFD   +++  ++ FF ++++
Sbjct: 81  FKKPENVHRHEVAKEGDYRFCFDNSFSMFNRKTVFFELIVE 121


>AE014298-2093|AAN09654.1|  242|Drosophila melanogaster CG9053-PA,
           isoform A protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +3

Query: 6   F*TPDSYHHHDFVLRSSLSICFDG*NNLYIMESNFFSILIK 128
           F  P++ H H+         CFD   +++  ++ FF ++++
Sbjct: 88  FKKPENVHRHEVAKEGDYRFCFDNSFSMFNRKTVFFELIVE 128


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,717,947
Number of Sequences: 53049
Number of extensions: 278307
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)