Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    30   0.64 
U49945-1|AAC47925.1|  414|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like ...    27   6.0  
AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical ...    26   7.9  

>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 177 FDFFFLEHCFAFYIF 133
           F FFFL HCFAF  F
Sbjct: 128 FRFFFLRHCFAFLFF 142


>U49945-1|AAC47925.1|  414|Caenorhabditis elegans Hypothetical
           protein C02H7.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 206 ENQWALIVMNLIFFFWNTVSLFTYS*F-YQNRKEIRFHYIKVVSSIKTD*KTTSQHKIMM 30
           E++WA  VM  +FF  N+V+   Y  F  Q R+E+  HY+     +     TT+Q+K   
Sbjct: 298 ESKWAYFVMTSLFFINNSVNPTVYIIFNTQLRREL--HYLICRHHV----ITTAQNKRKQ 351

Query: 29  VITVRGL 9
            +  RG+
Sbjct: 352 TLFGRGI 358


>AC006833-9|AAF60943.1|  318|Caenorhabditis elegans Saposin-like
           protein family protein7 protein.
          Length = 318

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 246 HRIGISTH*EDPVRKSVGINCHEFDFFFLEHCFAF 142
           HR+G+S   E+ +R  +   C      F E CFAF
Sbjct: 60  HRVGLS---ENQLRNQLYEKCRVLPSVFKEQCFAF 91


>AF078785-3|AAC27091.2|  481|Caenorhabditis elegans Hypothetical
           protein C04E12.5 protein.
          Length = 481

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 276 LARPVSRRIYHRIGIS-TH*EDPVRKSVGINCHEFDFFF 163
           LA  V   +  R+ ++  H ++P+ K +G+   EFDF F
Sbjct: 356 LASNVEHVVDRRLNVAYIHMKEPINKRIGLINWEFDFRF 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,342,415
Number of Sequences: 27780
Number of extensions: 155489
Number of successful extensions: 338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)