Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.70 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   0.70 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   0.70 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    20   8.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    20   8.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 81  NNLYIMESNFFSILIKLRICKKRN 152
           N +Y++  NF  +L      KKRN
Sbjct: 358 NTMYVLSDNFQQLLFSKYDAKKRN 381


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 213 PVRKSVGINCHEFDFFF 163
           P  +S+G+ C E+ FFF
Sbjct: 389 PAIRSIGLKCLEYLFFF 405


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 213 PVRKSVGINCHEFDFFF 163
           P  +S+G+ C E+ FFF
Sbjct: 389 PAIRSIGLKCLEYLFFF 405


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 156 VPKKKNQIHDN*CP 197
           VP K+N+I+ N CP
Sbjct: 202 VPGKRNEIYYNCCP 215


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -2

Query: 203 NQWALIVMNLIFFFWNTVSLFTYS 132
           N+W  I+   +++F  T++   Y+
Sbjct: 306 NEWLYILSGCLYYFSTTINPILYN 329


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 339 IPATAGRVGELTGST*ENLLALARPVSRRIYHRI 238
           +P T      L GST ++    +RP  +R++ R+
Sbjct: 80  LPTTPEYNNHLYGSTPDSRDYFSRPFEKRLHSRL 113


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = -2

Query: 203 NQWALIVMNLIFFFWNTVSLFTYS 132
           NQW   +   +++F  T++   Y+
Sbjct: 294 NQWVYPLTGCLYYFSTTINPILYN 317


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 132 RICKKRNSVPKK 167
           ++C K+N  PK+
Sbjct: 41  KVCSKKNDTPKE 52


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 132 RICKKRNSVPKK 167
           ++C K+N  PK+
Sbjct: 15  KVCSKKNDTPKE 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,494
Number of Sequences: 438
Number of extensions: 1684
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)