Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0013
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19150.1 68415.m02235 pectinesterase family protein contains ...    27   5.7  
At4g26000.1 68417.m03745 KH domain-containing protein single-str...    26   9.9  

>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 263 TGLARASKFS*VEPVSSPTRPAVAGMAL 346
           TG+   +K++ +   SSPT+PAVA M L
Sbjct: 127 TGITFKNKYN-IASSSSPTKPAVAAMML 153


>At4g26000.1 68417.m03745 KH domain-containing protein
           single-stranded nucleic acid-binding protein CBP -
           mouse, PIR2:S78515
          Length = 495

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 368 PNYSLLA*-EPFQLRPDG*VNSRAQPKRIC*P*QDQCLA 255
           P++SLLA  EP  L  D  V+SR QP  +    QD  L+
Sbjct: 285 PDFSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLS 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,804,425
Number of Sequences: 28952
Number of extensions: 142727
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)