Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0010
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0391 + 3015864-3016179,3016933-3017756,3017841-3018107,301...    31   0.85 
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805     30   2.0  
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897           29   3.4  

>01_01_0391 +
           3015864-3016179,3016933-3017756,3017841-3018107,
           3018505-3018762,3018950-3018997
          Length = 570

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 14  VNCLTGKCLFLSNIKCDIKEFDVT 85
           V C+ G+C FL +++ DIK F+VT
Sbjct: 536 VLCVIGRCKFLKHLELDIKMFNVT 559


>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
          Length = 517

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 HLEIQVEACHCALSCVRPTIIRTGSSSSAHIRSFK 506
           HLE+ ++ C  A  C RPT I T +    HI S +
Sbjct: 382 HLELNIKYCSMAEYCKRPTGIGTQNQRDHHIISLE 416


>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
          Length = 922

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 11  LVNCLTGKCLFLSNIKCDIKEFDVTLGPHRQSAVSRELDALIYNIQLGSRCCGA 172
           L+ C  G  L  +   C+   +D   G  R+ AV +ELD    ++  G+  C A
Sbjct: 117 LLGCRHGLVLIFNYNTCEFLVWDPVSGDRRRVAVPQELDGGERSVMNGAVLCAA 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,135,313
Number of Sequences: 37544
Number of extensions: 332568
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)