Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0010
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z19152-3|CAA79537.1|   82|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z77663-6|CAB01207.1|  360|Caenorhabditis elegans Hypothetical
           protein F53F4.7 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 464 YDGGADTRQRTMTRFNLYLKVSSSNKIFV 378
           ++G AD R+RTM   N Y+   SS++  V
Sbjct: 188 FEGTADIRKRTMNGANFYIPSKSSSQSLV 216


>Z19152-3|CAA79537.1|   82|Caenorhabditis elegans Hypothetical
           protein B0464.3 protein.
          Length = 82

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 68  KEFDVTLGPHRQSAVSREL 124
           K  D+ LGPHR+S V+R++
Sbjct: 56  KNIDMKLGPHRRSMVARQI 74


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 567 TTQRRTINIFLRNVRDNTLG 626
           T  R TIN FLRNV D ++G
Sbjct: 314 TDDRMTINGFLRNVTDESIG 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,650
Number of Sequences: 27780
Number of extensions: 296796
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)