Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0009
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 40 0.001
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.019
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.019
At2g05510.1 68415.m00583 glycine-rich protein 35 0.058
At1g61255.1 68414.m06903 expressed protein 35 0.058
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.077
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.077
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.077
At1g27710.1 68414.m03387 glycine-rich protein 33 0.13
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 33 0.23
At5g61660.1 68418.m07736 glycine-rich protein 32 0.31
At5g46730.1 68418.m05757 glycine-rich protein 32 0.41
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.41
At2g05440.2 68415.m00575 glycine-rich protein 32 0.41
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 31 0.54
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 31 0.54
At2g05530.1 68415.m00585 glycine-rich protein 31 0.54
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 31 0.72
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.72
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 31 0.72
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.95
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.95
At1g11850.2 68414.m01364 expressed protein 31 0.95
At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to SP... 30 1.3
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 30 1.3
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 30 1.3
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 30 1.3
At1g11850.1 68414.m01363 expressed protein 30 1.3
At1g10830.1 68414.m01244 sodium symporter-related contains five ... 30 1.3
At3g15400.1 68416.m01954 anther development protein, putative si... 29 2.2
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 29 2.2
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 29 2.9
At4g30460.1 68417.m04325 glycine-rich protein 29 2.9
At4g29030.1 68417.m04151 glycine-rich protein glycine-rich prote... 29 2.9
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 2.9
At2g05440.1 68415.m00574 glycine-rich protein 29 2.9
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 2.9
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 29 3.8
At4g10330.1 68417.m01698 glycine-rich protein 29 3.8
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 3.8
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.8
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.8
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 29 3.8
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 3.8
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 5.0
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 5.0
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 5.0
At4g21620.1 68417.m03134 glycine-rich protein 28 5.0
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 5.0
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 5.0
At1g66820.1 68414.m07595 glycine-rich protein 28 5.0
At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing ... 28 5.0
At1g04800.1 68414.m00476 glycine-rich protein 28 5.0
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 28 6.7
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 28 6.7
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 6.7
At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-contain... 28 6.7
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina... 28 6.7
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 28 6.7
At4g28100.1 68417.m04031 expressed protein 27 8.8
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 27 8.8
At3g24760.1 68416.m03108 F-box family protein ; similar to SKP... 27 8.8
At3g07560.1 68416.m00903 glycine-rich protein 27 8.8
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain... 27 8.8
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 8.8
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb... 27 8.8
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 24 9.2
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = +3
Query: 276 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLRFP 455
P +P PSP S + + +PS P HT S PS P P+ S H S P
Sbjct: 204 PATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHS--PAHAPSHSPAHAP 261
Query: 456 STFPRHTQS 482
S P H+ S
Sbjct: 262 SHSPAHSPS 270
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/67 (31%), Positives = 25/67 (37%)
Frame = +3
Query: 282 SPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLRFPST 461
SP P S + + TP+ P H S P P+P S H S PS
Sbjct: 177 SPAQPPKSSSPISHTPALSPSHATSHSPAT-----PSPSPKSPSPVSHSPSHSPAHTPSH 231
Query: 462 FPRHTQS 482
P HT S
Sbjct: 232 SPAHTPS 238
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 36.3 bits (80), Expect = 0.019
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +1
Query: 379 QGSRAPTLRGRQTRAISREGV-----R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGA 543
+G R+P++ G +R+ SR R SR RSR+ + SR+ +S P +
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRG 65
Query: 544 RAPALPSREAR---PLPRQGSSAPT 609
++PA P+R R P P +G+S+P+
Sbjct: 66 KSPAGPARRGRSPPPPPSKGASSPS 90
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 36.3 bits (80), Expect = 0.019
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +1
Query: 379 QGSRAPTLRGRQTRAISREGV-----R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGA 543
+G R+P++ G +R+ SR R SR RSR+ + SR+ +S P +
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRG 65
Query: 544 RAPALPSREAR---PLPRQGSSAPT 609
++PA P+R R P P +G+S+P+
Sbjct: 66 KSPAGPARRGRSPPPPPSKGASSPS 90
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 34.7 bits (76), Expect = 0.058
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 143 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 274
N G G+G+DG G+ GH G GG Y GG+ G GGH
Sbjct: 67 NGGGGHGLDGYGGGHGGHYGGGGGHYG-GGGGHGGGGHYGGGGH 109
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 274
G+G G G G+G G GG Y G Y G G GGH
Sbjct: 62 GHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGH 103
>At1g61255.1 68414.m06903 expressed protein
Length = 143
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 143 NLGYGYG-IDGLDV----GYIGHGQGLGGAYNYVDGGYSSGYGL 259
N GYG G GL G+I G G GG+Y+ + GGYS G G+
Sbjct: 48 NKGYGSGGYPGLTTEPATGFILPGSGPGGSYSELSGGYSKGRGV 91
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.3 bits (75), Expect = 0.077
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 373 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 549
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 550 PALPSREARPLPRQGSSAPTLP 615
P S+ P PR+ S P
Sbjct: 253 PGPRSKSRSPSPRRSRSRSRSP 274
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.3 bits (75), Expect = 0.077
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 373 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 549
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 550 PALPSREARPLPRQGSSAPTL 612
P S+ P PR+ + TL
Sbjct: 253 PGPRSKSRSPSPRRWITVETL 273
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.3 bits (75), Expect = 0.077
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 373 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 549
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 550 PALPSREARPLPRQGSSAPTLP 615
P S+ P PR+ S P
Sbjct: 253 PGPRSKSRSPSPRRSRSRSRSP 274
>At1g27710.1 68414.m03387 glycine-rich protein
Length = 212
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 131 RGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
+G L G GYG G G G+G G GG + GG+ G G GG
Sbjct: 99 KGELTAG-GYGGGGPGYGGGGYGPGGGGGGVVIGGGFGGGAGYGSGG 144
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +2
Query: 149 GYGYGIDGL-----DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHT 277
G+G+G G+ G G G G+G NY G SG G +GGH+
Sbjct: 84 GWGWGWGGVPNNTHSSGSGGSGWGMGPNNNYSSGSGGSGSGWGYGGHS 131
>At5g61660.1 68418.m07736 glycine-rich protein
Length = 134
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +2
Query: 149 GYGYGI-DGLDVGYIGHGQGLGGA----YNYVDGGYSSGYGLNFGG 271
GYGYG G GY G+G G GGA Y Y G SG G GG
Sbjct: 74 GYGYGSGSGSGTGY-GYGSGGGGARGGGYGYGSGNGRSGGGGGGGG 118
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 GYGYGIDGL-DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
GYG G +G G GHG G GGA + GGY+SG G GG
Sbjct: 72 GYG-GAEGYASGGGSGHGGGGGGAAS--SGGYASGAGEGGGG 110
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 274
GYG G G G G G+G GG+Y GG S G GGH
Sbjct: 242 GYGGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGGGH 283
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +2
Query: 134 GLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
G+ + GYG G G G G G+G GG Y + GY+SG G GG
Sbjct: 47 GVSSGGYG-GESGGGYGG-GSGEGAGGGYGGAE-GYASGGGSGHGG 89
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
G YG G G G G G GG Y GG + GYG GG
Sbjct: 220 GGAYGGGGAHGGGYGSGGGEGGGYG---GGAAGGYGGGGGG 257
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGYGLNFG 268
GYG G G G G G G GG Y GG ++SGYG G
Sbjct: 111 GYG-GAAGGHAGGGGGGSGGGGGSAYGAGGEHASGYGNGAG 150
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 GYGYGIDGLDVGYI-GHGQGLGGAYNYVDGGYSSGYGLNFGG 271
G G G GY G G+G GG Y GG++ G G GG
Sbjct: 88 GGGGGGAASSGGYASGAGEGGGGGYGGAAGGHAGGGGGGSGG 129
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 131 RGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
R LLN G G G G G GG GGY G G GG
Sbjct: 25 RNLLNYGQASGGGGHGGGGGSGGVSSGGYGGESGGGYGGGSGEGAGG 71
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 149 GYGYGIDGLD----VGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
GYG G+ +GY G G GG YN GGYS G G +GG
Sbjct: 279 GYGGGVGPYRGEPALGYSGRYGGGGGGYNR--GGYSMGGGGGYGG 321
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
G GYG G+ G+G G+GGA GGY G G + GG
Sbjct: 346 GGGYGSSGIG----GYGGGMGGAGG---GGYRGGGGYDMGG 379
Score = 30.7 bits (66), Expect = 0.95
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 143 NLGYGYGIDGLDVGYIGHGQGLGGAYNY---VDGGYSSGYGLNFGG 271
N G GYG DG G+ G G GG Y GG S GYG +GG
Sbjct: 227 NFGGGYG-DGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYG-GYGG 270
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 274
GYG G+ G G G+ G G V GG + GYG GG+
Sbjct: 356 GYGGGMGGAGGG--GYRGGGGYDMGGVGGGGAGGYGAGGGGN 395
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGH-GQGLGGAYNYVDGGYSS----GYGLNFGG 271
GYG G + G G G G GG GGY S GYG GG
Sbjct: 318 GYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGG 363
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVTKTITLVKGV 313
G YG G G G G G GG Y GGY G G + GG + + + GV
Sbjct: 100 GGHYGGGGGHYGGGGGGHGGGGHYGGGGGGYGGGGGHHGGGGHGLNEPVQTKPGV 154
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +2
Query: 143 NLGYGYGIDGLDVG---YIGHG--QGLGGAYNYVDGGYSSGYGLNFGG 271
N G G+G+DG G Y G G G GG + GG+ G G ++GG
Sbjct: 65 NGGGGHGLDGYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGG 112
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 271
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 271
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 155 GYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 274
G+G +G GY G G G G + GGY+ G G N GGH
Sbjct: 44 GHGGNG---GYNGGG-GYNGGGGHNGGGYNGGGGYNGGGH 79
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 31.1 bits (67), Expect = 0.72
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +2
Query: 308 GVPVPYAVDRPVP---YPVEKHVPYPVKVAVPQPYE--VVKHVPYHVKEYVKVPV 457
G PY+ +P P YP P P+K P PYE VK+ P +K Y PV
Sbjct: 46 GPKFPYSPPKPPPIEKYPPPVQYPPPIKKYPPPPYEHPPVKYPP-PIKTYPHPPV 99
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYG 256
GYG G G GY G G+ GG Y DGG G G
Sbjct: 131 GYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGG 166
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
GY G G G G+G GG GGY G G ++GG
Sbjct: 124 GYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGG 164
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 31.1 bits (67), Expect = 0.72
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 457 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLP-RQGSSAPTLPRGETRA 633
P + AIP +S + S LP RA ALP P+ R+G +AP LP T A
Sbjct: 200 PGNAAIPVEPPLTMSAEKESYAPLPPPPGRA-ALPPPPPLPMAVRKGVAAPPLPPPGTAA 258
Query: 634 IP 639
+P
Sbjct: 259 LP 260
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.95
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +1
Query: 373 SRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPR--QGAR 546
SR SR+P+ ++R+ SR R S RSR++ K +++ ++L R +R
Sbjct: 201 SRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSR 260
Query: 547 APALPSREARPLPRQGSSAPTLPRGETRAIPRRS 648
+P+ P ++ P PR S + + R +R+ P +S
Sbjct: 261 SPS-PDKKKSP-PRAMSRSKSRSRSRSRS-PSKS 291
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +1
Query: 403 RGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPL 582
R + R+ SR GSR RS + P R + R S PR+ +R P+
Sbjct: 183 RYEKERSYSRSPPHNGSRVRSGS-PGRVKSHSRSPRRS--VSPRKNRSYTPEQARSQSPV 239
Query: 583 PRQGSSAPTLPRG 621
PRQ S +PRG
Sbjct: 240 PRQSRSPTPVPRG 252
>At1g11850.2 68414.m01364 expressed protein
Length = 108
Score = 30.7 bits (66), Expect = 0.95
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 134 GLLNLGYGYGID---GLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
GL LG G GI GL +G G G G GG GG+ G G GG
Sbjct: 58 GLGGLGIGAGIGAGAGLGLGGGGGGLGGGGGGLLGGGGFGGGAGGGLGG 106
>At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to
SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
Length = 186
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +2
Query: 107 PLEKKLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVT 286
P++++ D+ G G GYG G G G G GG Y GG GYG G+ T
Sbjct: 19 PIQQQYDEYGNPMGGGGYGTGGGGGATGGQGYGTGG-QGYGSGG--QGYGTGGQGYGTGT 75
Query: 287 KT 292
T
Sbjct: 76 GT 77
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 268
G GYG G G G G G GG Y G + G+G G
Sbjct: 47 GQGYGTGGQGYGSGGQGYGTGG-QGYGTGTGTEGFGTGGG 85
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 134 GLLNLGYGYGIDG-LDVGYIGHGQGLGGAYNYVDGGYSSGYGLN 262
GL+ +G+ G + VG IG G G GG +V GGY++G N
Sbjct: 22 GLVQTDASFGVGGGVGVG-IGGGGGGGGGGVWVGGGYNNGGNRN 64
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 209 GGAYNYVDGGYSSG-YGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKHV 367
G Y V G G + L GG T T T + + + PY P P PV+ H+
Sbjct: 212 GHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHI 265
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 311 VPVPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPV 457
+P+P + P+P + H+ P+ +A+P P + +P + + +P+
Sbjct: 355 MPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMPMPMPMPMPMPM 403
>At1g11850.1 68414.m01363 expressed protein
Length = 93
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 140 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
L LG G G+ GL IG G G G GG+ G G GG
Sbjct: 51 LGLGGGAGLGGLG---IGAGIGAGAGLGLGGGGFGGGAGGGLGG 91
>At1g10830.1 68414.m01244 sodium symporter-related contains five
transmembrane domains; Interpro IPR001991
Sodium:dicarboxylate symporter; EST gb|F13926 comes from
this gene
Length = 367
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 487 LFDWVWRGNVDGNLNVLLHVIWHVFDDLVGLGHGYLDGIRHV 362
L WV+ G V G + +L+V+W D+ G G ++D + ++
Sbjct: 93 LVSWVYFGVVLGVVLFILNVVW--IDNSTGFGKSFIDAVSNI 132
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2
Query: 146 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 268
+G GYG G VGY G G G G + +G SSG G FG
Sbjct: 207 VGRGYGSGGSGVGY-GVGIGSSGGSGFGEGIGSSG-GNGFG 245
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +2
Query: 119 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
K D+RG + G Y G G G+ QG GG Y G Y G G GG
Sbjct: 38 KPDQRGYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGG 88
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 460
P P ++ P P PV K P K+ P P V K P ++ VPVH
Sbjct: 248 PKPPKIEHPPPVPVYKP---PPKIEKPPPVPVYKPPP-KIEHPPPVPVH 292
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 320 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 460
P V+ P P P + P P K+ P P V K P +++ VPV+
Sbjct: 232 PPKVELPPPIPKKPCPPKPPKIEHPPPVPVYKPPP-KIEKPPPVPVY 277
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTD 280
G G+G G G G G G G Y +GG GYG +GG D
Sbjct: 122 GGGHGGGGGGGGGRGGGGGSGNGEGYGEGG---GYGGGYGGGDD 162
>At4g29030.1 68417.m04151 glycine-rich protein glycine-rich protein
- Onobrychis viciifolia,PID:g2565429
Length = 115
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 149 GYGYGIDGL--DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDV 283
G G G+ G ++GY G G GG + GG SG G GG + +
Sbjct: 54 GVGGGVSGPGGNLGYGGFGGAGGGLGGGLGGGAGSGLGGGLGGGSGI 100
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +2
Query: 149 GYGYGIDGLDVG--YIGHGQG-LGGAYNYVDGGYSS---GYGLNFGG 271
GYG G G + G Y +G G LGG N GYSS YG FGG
Sbjct: 247 GYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGG 293
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 155 GYGIDGLDV-GYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVTKTITLVKGV 313
GYG G G GH G GG Y GGY G G + GG + + + GV
Sbjct: 74 GYGGGGGHYGGGGGHYGGGGGHYGGGGGGYGGGGGHHGGGGHGLNEPVQTKPGV 127
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 143 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG---YGLNFGGH 274
N G G+G+DG G GH G GG Y G Y G YG GGH
Sbjct: 65 NGGGGHGLDGYGGGG-GHYGGGGGHYGGGGGHYGGGGGGYGGG-GGH 109
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 143 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDG--GYSSGYGLNFGG 271
N G G G G + Y G+ G GG Y G GYG NFGG
Sbjct: 158 NAGGGGGYGG-NSSYGGNAGGYGGNPPYSGNAVGGGGGYGSNFGG 201
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 182 GYIGHG-QGLGGAYNYVDGGY---SSGYGLNFGGH 274
G+ G G G GG Y DGGY + GYG GG+
Sbjct: 115 GFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGY 149
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 1192
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 167 DGLDVGYIGHGQGLGGAYNYVDGGYSS-GY 253
DG D G G G G GGA GYSS GY
Sbjct: 219 DGKDGGEAGKGSGPGGATGPPKAGYSSHGY 248
>At4g10330.1 68417.m01698 glycine-rich protein
Length = 130
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 140 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 268
L +G G+G +G +G G G+ G + G G G+ FG
Sbjct: 35 LGVGCGFGFGAGLIGGVGFGPGVPGLQFGLGFGAGCGIGVGFG 77
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 146 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 250
LG+G G G+ VG+ G+G G G AY++ Y+ G
Sbjct: 64 LGFGAGC-GIGVGF-GYGVGRGAAYDHSRSYYNVG 96
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 472 IPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSA 603
+ RKE + R + QA PRQ +AP+ PS A+P+ SS+
Sbjct: 378 VAERKEDRIKRLQQYFQAQPRQYTQAPSAPS-PAQPVLSYVSSS 420
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +2
Query: 137 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 262
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +2
Query: 137 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 262
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 143 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGY-GLNFGGH 274
+ G G G G G G G G GG Y GG Y GY G + GG+
Sbjct: 579 SFGSGRGGYGGGGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSGGY 624
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +2
Query: 242 SSGYGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKHVPYPVKVAVP 394
S G G D + ++L P P + PVP+P E P PV P
Sbjct: 128 SGGNGWTESAANDPAREVSLA---PFPLQLTHPVPFPAEPGSPDPVSPPPP 175
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 155 GYGIDGLDVGYIGHGQGLGGAYNYVDGGY--SSGYGLNFGGH 274
G G G G G G G G Y GGY S GYG GG+
Sbjct: 122 GGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGY 163
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNY-VDGGY---SSGYGLNFGG 271
G GYG G GY G G GGA Y GGY + GYG N GG
Sbjct: 127 GGGYGGGG--GGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
GYG G G G G+G G GG GGY +GG
Sbjct: 142 GYGGGAGGYG-GSGGYGGGAGGYGGNSGGGYGGNAAGGYGG 181
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNY--VDGGYSSGYGLNFGGH 274
G GYG G GY G G GG+ Y GGY G +GG+
Sbjct: 134 GGGYGGSG---GYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGN 174
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 191 GHGQGLGGAYNYVDGGYSSGYGLNFGG 271
G G+G GG GGY G G ++GG
Sbjct: 74 GGGRGYGGGGRREGGGYGGGDGGSYGG 100
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 376 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRTS*QALPRQGA 543
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+ ++ R
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEV 67
Query: 544 RAP 552
P
Sbjct: 68 ENP 70
>At4g21620.1 68417.m03134 glycine-rich protein
Length = 131
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 113 EKKLDKRGLLNLGYGYGIDGLDVGYI-GHGQGLGGAYNYVDGGYSSGYGLNFGG 271
E K G LG+G G+ G G+I G G G G V GGY G+G GG
Sbjct: 21 ESARQKSGNDGLGFG-GVPGS--GFIPGFGNGFPGTG--VGGGYGGGFGGPSGG 69
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 320 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 460
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 31 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 320 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 460
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 320 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 460
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 31 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +2
Query: 320 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 460
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At1g66820.1 68414.m07595 glycine-rich protein
Length = 109
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 146 LGYGYGIDGLDVGYIGHGQGLGGAYNYVD 232
LG+G G G+ G+ G+G G+GG Y++ D
Sbjct: 76 LGFGIGC-GIGFGF-GYGFGVGGGYSFDD 102
>At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing
protein
Length = 209
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIG 193
GYGYG++ + +GY+G
Sbjct: 148 GYGYGLEEMSIGYLG 162
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 250
G+G GI G G+ G G G GGA VDGG+ G
Sbjct: 81 GFGGGIGG---GFGGGGFG-GGAGKGVDGGFGKG 110
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 308 GVPVPYAVDRP--VPYP-VEKHVPYPVKVAVPQPYEVVKHVPYHVKE 439
G P+P + + P +P+P +E P P+ VP P + V VP+ +E
Sbjct: 74 GKPLPASSNDPPQLPHPPLETATPTPLPPPVPVPVKQVTSVPFDWEE 120
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 274
G GYG G GY G G G GG GG S Y GH
Sbjct: 155 GGGYGGGG---GYGGGGGGYGGGGRGGGGGGGSCYSCGESGH 193
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 376 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRT 513
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRS 57
>At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF00169: Pleckstring homology
(PH) domain, PF01852: Lipid-binding START domain
Length = 733
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Frame = -3
Query: 544 EHLDGVRPV-------NWYVYGI--RHLLFDWVWRGNVDGNLNVLLHVIWH 419
EHLDG + +W +G+ R LL WR DG +L H ++H
Sbjct: 249 EHLDGHTDIIHLQLYSDWLPWGMNRRDLLLRRYWRREDDGTYVILCHSVYH 299
>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 769
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 119 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 250
K+ RG+++ G +G + + HG G+ Y Y DGG+ G
Sbjct: 139 KMSGRGVMSWANGDLFNGFWLNGLRHGSGV---YKYADGGFYFG 179
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 88 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 138
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 116 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 166
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 144 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 194
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 172 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 222
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 200 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 250
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 228 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 278
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 256 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 306
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 284 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 334
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 312 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 362
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 314 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 460
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 340 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 390
>At4g28100.1 68417.m04031 expressed protein
Length = 304
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 600 CPNLTPWRNTCHTPSKLRCPYRSPTP 677
CP L W H S L+ P +PTP
Sbjct: 72 CPVLAAWLFAAHARSALQLPAPAPTP 97
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 305 KGVPVPYAVDRPVPYPVEKHVPYPVKVAVPQP 400
K PVP +PVP P K VP P +VP P
Sbjct: 35 KHKPVPSPKPKPVPSPKPKPVPSP---SVPSP 63
>At3g24760.1 68416.m03108 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 383
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 273 IPTSPRPSPSSKASLYL--TPSTDPFHTQ 353
+P SP PSPSS L+L +T FH Q
Sbjct: 50 LPPSPSPSPSSPPWLFLFGIHNTSSFHNQ 78
>At3g07560.1 68416.m00903 glycine-rich protein
Length = 304
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +2
Query: 155 GYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 268
GYG GL +G G G Y GGY G G G
Sbjct: 128 GYGGGGLYGSSGMYGGGAMGGYGGTMGGYGMGMGTGMG 165
>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 411
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG--H-TDVTKTI 295
G G+ G G G+G G G Y GG GYG GG H +VT+T+
Sbjct: 64 GPGFFFGGAGPGP-GYGGGGGHGPGYGGGGDGRGYGSETGGGNHGPEVTRTL 114
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 149 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 271
GYGYG ++GY G GG Y+++ GY +GG
Sbjct: 303 GYGYGGQMFNMGY-----GAGG-YSHMGSGYGVAAAAAYGG 337
>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
gb|AA595092 come from this gene
Length = 234
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 367 ALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS 516
A SR+ + + RQTR + R P+S+A+ R+E A + T+
Sbjct: 14 AKSRKNAAEAEQKDRQTREKEEQYWREAEGPKSKAVKKREEEAEKKAETA 63
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 24.2 bits (50), Expect(2) = 9.2
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 285 PRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLRFPSTF 464
P PS S S L+P P Q + P++ P P+ + S ++ S ++ P+
Sbjct: 669 PTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQAPNL---SPVQAPTPV 725
Query: 465 PRHTQSKRRCLIP 503
T S +P
Sbjct: 726 QAPTTSSETSQVP 738
Score = 21.4 bits (43), Expect(2) = 9.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 612 TPWRNTCHTPSKLRCPYRSPTP 677
TP H P+ P +SPTP
Sbjct: 753 TPILEPVHAPTPNSKPVQSPTP 774
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,416,605
Number of Sequences: 28952
Number of extensions: 290973
Number of successful extensions: 1437
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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