Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0005
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)                  31   0.64 
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              29   3.4  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          28   7.9  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              28   7.9  

>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
          Length = 439

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 512 RCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARS 411
           +CD  G H  C++ +G K  TCD G  ++VG  S
Sbjct: 76  KCDGCG-HGSCQISAGKKSCTCDYGWLNNVGDAS 108


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = +3

Query: 294 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATT 473
           TP    T    S P      +  +  I   +P  P ++  PS+  TP+T   S P   +T
Sbjct: 26  TPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPST--PSTPCTPST 83

Query: 474 YTTPFVQTVPIASTASLPVA 533
            +TP   + P  ST S P A
Sbjct: 84  PSTPSTPSTP--STPSTPSA 101



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 366 HFIKKRSPQWPVSYIAPSSYITPNT-YIASGPLGATTYTTPFVQTVPIA-STASLP 527
           H +K  +P  P +   PS+  TP+T    S P    T +TP   + PI  ST S P
Sbjct: 5   HRLKLSTPSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTP 60


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 385 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQ 534
           LH+    T+LL P ++  P  Q  LL+P+    P  +   S   HH+ ++
Sbjct: 668 LHHQNHNTTLLQPVTITPPKPQHTLLQPVTITPPKPQHNTSTTSHHYTTK 717


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 411 APSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 530
           APSS    +T   +GP   TT   P V T+   +TA+ P+
Sbjct: 804 APSSNPNESTTPTTGPTTGTTALPPGVTTITTPATATTPL 843


>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 391 NGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRS 507
           N P  + LL    LPT   Q+ L +P P   PS  P RS
Sbjct: 278 NTPFVSRLLLALVLPTMHLQLLLTKPTPATPPSRAPTRS 316


>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 276 TTYHGKTPLLASTSYVSSIP 335
           T YHG TP   ST Y  SIP
Sbjct: 387 TPYHGSTPYRGSTPYRGSIP 406


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 378 KRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 527
           K++   PVS    ++  TP     + P   T   TP  +T P ASTA  P
Sbjct: 291 KKTTTKPVSQPGETTASTPKAPGPTQPASTTIEATPQPETQPGASTAKAP 340


>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 330 IPLISQPIAYS--AHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVP 503
           +P+I  P ++   +HF+   S   P+  I  SSY   + +++SG L    Y T + + V 
Sbjct: 314 LPIIGYPTSHHRVSHFL---SSGIPLPIIGLSSYHRVSHFLSSGCLPIIGYPTSYHRVVF 370

Query: 504 IASTASLPVAAH 539
            +S   LP+  +
Sbjct: 371 PSSGIPLPIIGY 382


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 381 RSPQWPVSYIAPSSY--ITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 530
           R P  PVSY  P+SY    P +  +S P+ + + +TP   + PI  ++S+ V
Sbjct: 40  RRPPVPVSYELPASYQRSVPVSTSSSTPVSSPSNSTP---STPIRKSSSVTV 88


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 385 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPC 501
           LH+ P + S  +P S P   + +    P P  HPS +PC
Sbjct: 463 LHSHP-SPSQPSPVSHPPAQALLHTSHPSPATHPSPKPC 500


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 396 PVSYIAPSSYITPNTYIASGPLGAT-TYTTPFVQTVPIASTASLPVAAHL 542
           P +  AP +   P T  AS    A  T T   V T P A+TASL   A L
Sbjct: 154 PETTTAPEATTAPETTTASLVTTAPETTTASLVTTAPEATTASLATTASL 203


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/80 (25%), Positives = 30/80 (37%)
 Frame = +3

Query: 276  TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 455
            TT  G+T     T+    I +  +        +   +   PV+ IAP S + P T +A  
Sbjct: 1896 TTVAGETTAAPDTTMAPEITVAPETTVAPETTVVPETTSAPVTTIAPESTLVPETTVAPD 1955

Query: 456  PLGATTYTTPFVQTVPIAST 515
               A   T     T+P   T
Sbjct: 1956 TTVAPETTVVPETTMPPPKT 1975


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,782,758
Number of Sequences: 59808
Number of extensions: 401248
Number of successful extensions: 1389
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)